Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KHW16_RS15320 Genome accession   NZ_CP074407
Coordinates   3186053..3187480 (-) Length   475 a.a.
NCBI ID   WP_074158290.1    Uniprot ID   -
Organism   Escherichia coli strain GDAR2-2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3181053..3192480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW16_RS15290 (KHW16_15210) yeeZ 3181108..3181932 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  KHW16_RS15295 (KHW16_15215) yeeY 3181978..3182907 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KHW16_RS15300 (KHW16_15220) yoeI 3183122..3183184 (+) 63 WP_010723108.1 membrane protein YoeI -
  KHW16_RS15305 (KHW16_15225) plaP 3183174..3184532 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KHW16_RS15310 (KHW16_15230) tsuA 3184711..3185769 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  KHW16_RS15315 (KHW16_15235) tsuB 3185783..3186010 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KHW16_RS15320 (KHW16_15240) sbcB 3186053..3187480 (-) 1428 WP_074158290.1 exodeoxyribonuclease I Machinery gene
  KHW16_RS15325 (KHW16_15245) dacD 3187689..3188855 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KHW16_RS15330 (KHW16_15250) sbmC 3188974..3189447 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  KHW16_RS15335 (KHW16_15255) yeeA 3189646..3190704 (+) 1059 WP_001200891.1 FUSC family protein -
  KHW16_RS15340 (KHW16_15260) tmaR 3190876..3191205 (+) 330 WP_000450409.1 DUF496 family protein -
  KHW16_RS15345 (KHW16_15265) - 3191306..3191749 (-) 444 WP_087889711.1 EutP/PduV family microcompartment system protein -
  KHW16_RS15350 (KHW16_15270) pduU 3191754..3192104 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54535.82 Da        Isoelectric Point: 5.4666

>NTDB_id=491325 KHW16_RS15320 WP_074158290.1 3186053..3187480(-) (sbcB) [Escherichia coli strain GDAR2-2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEAWAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEFTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=491325 KHW16_RS15320 WP_074158290.1 3186053..3187480(-) (sbcB) [Escherichia coli strain GDAR2-2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCATGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAATTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579