Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   KGS77_RS20565 Genome accession   NZ_CP074380
Coordinates   4687551..4688552 (+) Length   333 a.a.
NCBI ID   WP_242583991.1    Uniprot ID   -
Organism   Streptomyces sp. MST-110588     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4682551..4693552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS77_RS20540 (KGS77_20410) - 4683358..4683855 (-) 498 WP_242583976.1 MarR family transcriptional regulator -
  KGS77_RS20545 (KGS77_20415) - 4683992..4685038 (-) 1047 WP_242583979.1 questin oxidase family protein -
  KGS77_RS20550 (KGS77_20420) - 4685306..4685728 (+) 423 WP_242583981.1 pyridoxamine 5'-phosphate oxidase family protein -
  KGS77_RS20555 (KGS77_20425) - 4685815..4686333 (+) 519 WP_242583985.1 pyridoxamine 5'-phosphate oxidase family protein -
  KGS77_RS20560 (KGS77_20430) - 4686440..4686922 (-) 483 WP_242583988.1 hypothetical protein -
  KGS77_RS20565 (KGS77_20435) rpoS 4687551..4688552 (+) 1002 WP_242583991.1 sigma-70 family RNA polymerase sigma factor Regulator
  KGS77_RS20570 (KGS77_20440) - 4688582..4689574 (-) 993 WP_242583993.1 VOC family protein -
  KGS77_RS20575 (KGS77_20445) - 4689766..4690545 (-) 780 WP_347404511.1 TetR/AcrR family transcriptional regulator -
  KGS77_RS20580 (KGS77_20450) - 4690708..4691295 (+) 588 WP_242583995.1 NAD(P)H-dependent oxidoreductase -
  KGS77_RS20585 (KGS77_20455) - 4691354..4693024 (+) 1671 WP_347404512.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37002.49 Da        Isoelectric Point: 4.8830

>NTDB_id=491100 KGS77_RS20565 WP_242583991.1 4687551..4688552(+) (rpoS) [Streptomyces sp. MST-110588]
MATRAVARRQATTSGADGASSVRAAGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEITDGNAA
GASREELEALAAEGDRAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIAKELNSTPERVTDVLDWARDPVSLNMSVDDEGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDHRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMAHDTGFDAVA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=491100 KGS77_RS20565 WP_242583991.1 4687551..4688552(+) (rpoS) [Streptomyces sp. MST-110588]
ATGGCAACCCGTGCCGTCGCCCGACGTCAGGCCACCACCAGCGGTGCCGACGGGGCCAGCAGTGTTCGCGCCGCAGGCGG
GGAGATCGCCGATCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCCCTGCTCGACGCCGCCAAAGAAG
TCGAGCTGTCCCAGACCATCGAAGCCGGCGTCTACGCCCGCCAGATCCTGGACGGCGAGATAACCGACGGCAACGCCGCC
GGCGCCAGCCGCGAGGAACTGGAAGCGCTGGCCGCCGAAGGTGACCGCGCCAAGGACGTCTTCATCCGCTCCAACCTCCG
CCTGGTGGTCGCGGTCGCCCGCCGCTACCCGCGCAGCGGCCTTCCCCTCCTGGACCTGATCCAGGAAGGCAACGCGGGCC
TGGTGCGCGCCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCCCGTACGATCCGGCTCCCCGTCCACCTCGTCGAGGAACTGGGCCGCATCCGCCG
CGTCCAGCGCGAGTTCAACCGCGAGAACGGCCGCGACCCGGAGCCCGCCGAGATCGCCAAGGAGCTGAACTCCACGCCGG
AGCGCGTCACGGACGTACTGGACTGGGCCCGCGACCCGGTCAGTCTGAACATGTCCGTGGACGACGAGGGCGACACCCAG
TTCGGCGACCTCCTGGAGGACACCTCCGCCGCCTCCCCCGAACAGTCCGTCCTCACCCTCCTGCGCAGCGAGGAACTGGA
AGACCTCATCGACCGCCTCGACCACCGCACCGCCTCGATCATCAAGGCCCGCTACGGCATCGAGGACGGCCGCGAGCGCA
CCCTGACCGAGGTCGGCAAACAGCACGGCCTCACCCGCGAACGAATCCGCCAGATCGAGAAGCACGCCCTCCTCGAACTG
AAGCGGATGGCGCACGACACGGGCTTCGACGCGGTCGCCTAG

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70, region 4 (Sigma70_r4)

(270-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.867

90.39

0.36