Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KGS77_RS17075 Genome accession   NZ_CP074380
Coordinates   3888048..3889196 (+) Length   382 a.a.
NCBI ID   WP_242582554.1    Uniprot ID   -
Organism   Streptomyces sp. MST-110588     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3883048..3894196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS77_RS17065 (KGS77_16970) dnaN 3885630..3886760 (+) 1131 WP_242582550.1 DNA polymerase III subunit beta -
  KGS77_RS17070 (KGS77_16975) gnd 3887032..3887913 (+) 882 WP_242582552.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  KGS77_RS17075 (KGS77_16980) recF 3888048..3889196 (+) 1149 WP_242582554.1 DNA replication/repair protein RecF Machinery gene
  KGS77_RS17080 (KGS77_16985) - 3889286..3889780 (+) 495 WP_242587516.1 DciA family protein -
  KGS77_RS17085 (KGS77_16990) gyrB 3890339..3892396 (+) 2058 WP_242582556.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41155.77 Da        Isoelectric Point: 7.5653

>NTDB_id=491097 KGS77_RS17075 WP_242582554.1 3888048..3889196(+) (recF) [Streptomyces sp. MST-110588]
MHVTHLSLADFRSYARVEVPLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRKGAERAIVRASVVQGERQ
QLVELELNPGRANRARINRSSQVRPRDVLGILRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKTAALARRHGGRQLDLSTLDVWDQHLARVGAELLAQRLDLIAALQPLADKAYEQLAPGGGPVGLEYRGSLGELPA
GAAAGGASREELYGLLSEALGQARRSEIERGVTLVGPHRDDLLLNLGELPAKGYASHGESWSYALALRLASYDLLRSEGN
EPVLVLDDVFAELDARRRERLAELVAPGEQVLVTAAVDEDVPGQLAGARFAVSGGTAEKVRP

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=491097 KGS77_RS17075 WP_242582554.1 3888048..3889196(+) (recF) [Streptomyces sp. MST-110588]
ATGCACGTCACGCATCTCTCGCTCGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCGCTCGGACCGGGCGTCACGGC
TTTCGTGGGCCCCAACGGGCAGGGCAAGACCAACCTCGTTGAGGCGGTGGGCTACCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCCGACGCGCCGCTGGTGCGCAAGGGGGCGGAGCGGGCGATCGTCCGGGCTTCGGTGGTGCAGGGCGAGCGGCAG
CAGCTCGTGGAGCTGGAGCTGAATCCGGGCCGCGCCAACCGCGCGCGGATCAACCGGTCCTCGCAGGTCAGGCCGCGGGA
CGTGCTGGGCATCCTGCGGACGGTGCTGTTCGCGCCGGAGGACCTGGCGCTGGTCAAGGGCGATCCGGGGGAGCGCCGCC
GCTTCCTGGACGAGCTGATCACCGCGCGCTCGCCGCGGATGGCGGGCGTGCGGTCGGACTACGACCGGGTGCTCAAGCAG
CGGAACACCCTGCTCAAGACGGCGGCGCTGGCGCGGCGGCACGGTGGCCGGCAGCTCGACCTGTCCACTCTTGACGTATG
GGATCAGCACCTTGCCCGCGTGGGTGCGGAACTGCTCGCTCAGCGTCTGGATCTGATCGCCGCGTTGCAGCCGCTGGCGG
ACAAGGCGTACGAGCAGCTCGCACCCGGCGGCGGCCCGGTGGGGCTGGAGTACCGCGGTTCCCTGGGCGAACTGCCGGCG
GGCGCCGCCGCGGGCGGGGCCTCGCGCGAGGAGCTGTACGGGCTGCTGTCGGAGGCCCTCGGCCAGGCGCGCAGGAGCGA
GATCGAGCGCGGGGTGACACTGGTCGGGCCGCACCGCGACGACCTGCTGCTCAATCTGGGGGAGCTGCCGGCGAAGGGGT
ACGCCAGTCACGGCGAGTCGTGGTCCTACGCGCTGGCGCTCCGCCTGGCCTCGTACGACCTGCTGCGCTCCGAGGGCAAC
GAGCCGGTGCTGGTGCTGGACGACGTGTTCGCGGAGCTGGACGCGCGGCGCCGGGAGCGGCTGGCGGAGCTGGTGGCGCC
GGGCGAGCAGGTGCTGGTGACGGCGGCGGTGGACGAGGACGTGCCGGGGCAGTTGGCCGGGGCGCGGTTCGCGGTGTCCG
GCGGTACGGCGGAGAAGGTCCGTCCGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.466

97.12

0.364