Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KGS77_RS14730 Genome accession   NZ_CP074380
Coordinates   3382950..3384485 (+) Length   511 a.a.
NCBI ID   WP_242581591.1    Uniprot ID   -
Organism   Streptomyces sp. MST-110588     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3377950..3389485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS77_RS14715 (KGS77_14605) - 3378755..3379687 (-) 933 WP_242581586.1 Ppx/GppA phosphatase family protein -
  KGS77_RS14720 (KGS77_14610) - 3379748..3380596 (+) 849 WP_242581588.1 hypothetical protein -
  KGS77_RS35010 - 3380690..3381547 (-) 858 WP_347404492.1 hypothetical protein -
  KGS77_RS35015 - 3381583..3382647 (-) 1065 WP_347404493.1 hypothetical protein -
  KGS77_RS14730 (KGS77_14620) radA/sms 3382950..3384485 (+) 1536 WP_242581591.1 DNA repair protein RadA Machinery gene
  KGS77_RS14735 (KGS77_14625) disA 3384702..3385850 (+) 1149 WP_242581593.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  KGS77_RS14740 (KGS77_14630) - 3385886..3386875 (-) 990 WP_242581595.1 NAD-dependent epimerase/dehydratase family protein -
  KGS77_RS14745 (KGS77_14635) - 3387066..3387751 (-) 686 Protein_2947 aspartate/glutamate racemase family protein -
  KGS77_RS14750 (KGS77_14640) - 3387846..3388658 (-) 813 WP_242581596.1 hypothetical protein -
  KGS77_RS14755 (KGS77_14645) - 3388775..3389314 (-) 540 WP_242581597.1 pyridoxamine 5'-phosphate oxidase -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53812.45 Da        Isoelectric Point: 7.6853

>NTDB_id=491090 KGS77_RS14730 WP_242581591.1 3382950..3384485(+) (radA/sms) [Streptomyces sp. MST-110588]
MATRKTPAKERPSYRCTECGWTTVKWLGRCPECQAWGTVEEFGGAPAVRMTAPGRVTTAALPIAQVDGRQATARPTGVDE
LDRVLGGGLVPGAVILLAGEPGVGKSTLLLDVAAKAAGPEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLSAL
LGHLDAVKPALLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMCTLLVGHVTKDGAIAGPRLLEHLVDVVLG
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAARLGFTHALVPADPGKIPPGMRVLEVADVGEALRVLPKHVRRAAPDEDAERAQDPGRSPRER
RRESGREDGRGSGRGTARGSARESVPEEAPA

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=491090 KGS77_RS14730 WP_242581591.1 3382950..3384485(+) (radA/sms) [Streptomyces sp. MST-110588]
ATGGCAACCCGTAAAACCCCGGCCAAGGAGCGCCCCTCCTACCGCTGCACCGAATGCGGCTGGACGACCGTGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTCCGTATGACCGCGCCCG
GCCGTGTCACGACGGCCGCGCTGCCCATCGCGCAGGTCGACGGCCGCCAGGCCACCGCCCGGCCCACGGGCGTGGACGAG
CTGGACCGGGTGCTGGGCGGCGGCCTGGTCCCCGGCGCGGTGATCCTGCTCGCCGGCGAGCCGGGCGTGGGCAAGTCCAC
GCTCCTGCTGGACGTCGCCGCGAAGGCAGCCGGCCCCGAGCACCGCACGCTGTATGTGACCGGCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTCTACCTGGCCGCCGAGACCGACCTGTCCGCGCTG
CTGGGCCATCTGGACGCGGTCAAGCCCGCGCTGCTGATCGTGGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGG
TGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTGGCCGGGGCCCTGATCCGGGCGTCCAAGGAGCGCGGGATGTGCACAC
TCCTGGTCGGCCATGTCACCAAGGACGGCGCCATCGCCGGCCCCCGCCTGCTGGAGCACCTCGTCGACGTCGTGCTCGGC
TTCGAGGGCGACCGGCACGCCCGCCTGCGGCTCGTACGCGGCGTGAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAAGGGATCACCGGCCTGGCCGACCCCTCCGGCCTCTTCCTGACCCGCCGCGCCGAGCCGGTGC
CCGGTACGTGCCTGACCGTCACCCTGGAAGGCCGGCGCCCGCTGGTGGCCGAGGTCCAGGCGCTGACCGTCGACTCCCAG
ATCCCCTCCCCGCGCCGCACGACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTACTGGAGCAGCGCGG
CCGTATCAGCGCCCTGGGGAAGCGGGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTGACCGAGCCGGCCGCCGACC
TGGCCGTGGCCCTCGCACTGGCCAGCGCCGCCAGTGACACCCCGCTGCCCAAGAACCTCGTCGCCATCGGCGAGGTGGGG
CTGGCGGGCGAGGTCAGGCGGGTGACGGGCGTCCAGCGCCGGCTGGCGGAGGCGGCCCGGCTCGGCTTCACCCACGCCCT
GGTCCCGGCCGACCCGGGCAAGATCCCGCCGGGCATGCGGGTGCTGGAGGTGGCCGATGTGGGCGAGGCGCTGCGGGTGC
TGCCCAAGCACGTACGGCGTGCGGCCCCTGATGAGGACGCGGAGCGCGCGCAGGACCCGGGAAGGAGCCCGCGCGAGCGC
CGCCGGGAGAGCGGACGCGAGGACGGGCGTGGGAGCGGGCGCGGCACGGCCCGGGGAAGCGCCCGGGAAAGCGTCCCGGA
GGAGGCCCCCGCATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

88.65

0.389
  radA Streptococcus mitis SK321

43.488

88.65

0.386
  radA Streptococcus mitis NCTC 12261

43.488

88.65

0.386
  radA Streptococcus pneumoniae TIGR4

43.046

88.65

0.382
  radA Streptococcus pneumoniae D39

43.046

88.65

0.382
  radA Streptococcus pneumoniae Rx1

43.046

88.65

0.382
  radA Streptococcus pneumoniae R6

43.046

88.65

0.382