Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   MSA_RS07045 Genome accession   NC_021486
Coordinates   1331863..1332303 (-) Length   146 a.a.
NCBI ID   WP_016480960.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326863..1337303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS07030 (MSA_14500) - 1327521..1328147 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  MSA_RS07035 (MSA_14510) rcrQ 1328255..1330009 (-) 1755 WP_016480958.1 ABC transporter ATP-binding protein Regulator
  MSA_RS07040 (MSA_14520) rcrP 1329999..1331816 (-) 1818 WP_016480959.1 ABC transporter ATP-binding protein Regulator
  MSA_RS07045 (MSA_14530) rcrR 1331863..1332303 (-) 441 WP_016480960.1 MarR family transcriptional regulator Regulator
  MSA_RS07050 (MSA_14540) - 1332572..1334644 (+) 2073 WP_016480961.1 bifunctional metallophosphatase/5'-nucleotidase -
  MSA_RS07055 (MSA_14550) - 1334681..1335091 (-) 411 WP_000594936.1 peptide deformylase -
  MSA_RS07060 (MSA_14560) gdhA 1335161..1336510 (-) 1350 WP_016480962.1 NADP-specific glutamate dehydrogenase -
  MSA_RS07065 (MSA_14570) - 1336678..1337187 (+) 510 WP_000870955.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16996.86 Da        Isoelectric Point: 9.8523

>NTDB_id=49101 MSA_RS07045 WP_016480960.1 1331863..1332303(-) (rcrR) [Streptococcus agalactiae ILRI005]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSRTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=49101 MSA_RS07045 WP_016480960.1 1331863..1332303(-) (rcrR) [Streptococcus agalactiae ILRI005]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAATATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATTTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAGGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAGTTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.571

95.89

0.418