Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KG092_RS08935 Genome accession   NZ_CP074366
Coordinates   1877294..1878721 (-) Length   475 a.a.
NCBI ID   WP_000980602.1    Uniprot ID   -
Organism   Escherichia coli strain ZYB62     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1872294..1883721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG092_RS08905 (KG092_08835) yeeZ 1872349..1873173 (+) 825 WP_040073566.1 SDR family oxidoreductase -
  KG092_RS08910 (KG092_08840) yeeY 1873219..1874148 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KG092_RS08915 (KG092_08845) yoeI 1874363..1874425 (+) 63 WP_010723108.1 membrane protein YoeI -
  KG092_RS08920 (KG092_08850) plaP 1874415..1875773 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KG092_RS08925 (KG092_08855) tsuA 1875952..1877010 (+) 1059 WP_040073567.1 thiosulfate utilization transporter TsuA/YeeE -
  KG092_RS08930 (KG092_08860) tsuB 1877024..1877251 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KG092_RS08935 (KG092_08865) sbcB 1877294..1878721 (-) 1428 WP_000980602.1 exodeoxyribonuclease I Machinery gene
  KG092_RS08940 (KG092_08870) dacD 1878930..1880096 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KG092_RS08945 (KG092_08875) sbmC 1880215..1880688 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  KG092_RS08950 (KG092_08880) yeeA 1880886..1881944 (+) 1059 WP_001200891.1 FUSC family protein -
  KG092_RS08955 (KG092_08885) tmaR 1882116..1882445 (+) 330 WP_000450409.1 DUF496 family protein -
  KG092_RS25480 (KG092_08890) - 1882546..1882728 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KG092_RS25560 (KG092_08895) - 1882800..1882928 (+) 129 Protein_1751 transposase domain-containing protein -
  KG092_RS08970 (KG092_08900) - 1883217..1883309 (-) 93 Protein_1752 DUF957 domain-containing protein -
  KG092_RS08975 (KG092_08905) yeeW 1883343..1883537 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54427.72 Da        Isoelectric Point: 5.6070

>NTDB_id=491008 KG092_RS08935 WP_000980602.1 1877294..1878721(-) (sbcB) [Escherichia coli strain ZYB62]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=491008 KG092_RS08935 WP_000980602.1 1877294..1878721(-) (sbcB) [Escherichia coli strain ZYB62]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581