Detailed information NTG0490917

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFQ22_RS04855
• Genome accession: NZ_CP074359
• Coordinates: 990438..991430 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain XJ6.2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 985438..996430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFQ22_RS04825 (KFQ22_04760)	ispD	985499..986209 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFQ22_RS04830 (KFQ22_04765)	ispF	986209..986688 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFQ22_RS04835 (KFQ22_04770)	truD	986685..987734 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFQ22_RS04840 (KFQ22_04775)	surE	987715..988476 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFQ22_RS04845 (KFQ22_04780)	pcm	988470..989096 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFQ22_RS04850 (KFQ22_04785)	nlpD	989281..990375 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KFQ22_RS04855 (KFQ22_04790)	rpoS	990438..991430 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFQ22_RS04860 (KFQ22_04795)	ygbN	991524..992888 (-)	1365	WP_000104441.1	GntP family transporter	-
KFQ22_RS04865 (KFQ22_04800)	ygbM	992977..993753 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KFQ22_RS04870 (KFQ22_04805)	ygbL	993758..994396 (-)	639	WP_001278994.1	aldolase	-
KFQ22_RS04875 (KFQ22_04810)	otnK	994393..995655 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=490917 KFQ22_RS04855 WP_000081550.1 990438..991430(+) (rpoS) [Escherichia coli strain XJ6.2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=490917 KFQ22_RS04855 WP_000081550.1 990438..991430(+) (rpoS) [Escherichia coli strain XJ6.2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715