Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFQ18_RS08630 Genome accession   NZ_CP074356
Coordinates   1838095..1839522 (-) Length   475 a.a.
NCBI ID   WP_275877626.1    Uniprot ID   -
Organism   Escherichia coli strain XJ6.1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1833095..1844522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ18_RS08600 (KFQ18_08505) yeeZ 1833150..1833974 (+) 825 WP_000754756.1 SDR family oxidoreductase -
  KFQ18_RS08605 (KFQ18_08510) yeeY 1834020..1834949 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFQ18_RS08610 (KFQ18_08515) yoeI 1835164..1835226 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFQ18_RS08615 (KFQ18_08520) plaP 1835216..1836574 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFQ18_RS08620 (KFQ18_08525) tsuA 1836753..1837811 (+) 1059 WP_001759318.1 thiosulfate utilization transporter TsuA/YeeE -
  KFQ18_RS08625 (KFQ18_08530) tsuB 1837825..1838052 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFQ18_RS08630 (KFQ18_08535) sbcB 1838095..1839522 (-) 1428 WP_275877626.1 exodeoxyribonuclease I Machinery gene
  KFQ18_RS08635 (KFQ18_08540) dacD 1839731..1840897 (+) 1167 WP_275877627.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFQ18_RS08640 (KFQ18_08545) sbmC 1841016..1841489 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  KFQ18_RS08645 (KFQ18_08550) yeeA 1841687..1842745 (+) 1059 WP_275877628.1 FUSC family protein -
  KFQ18_RS08650 (KFQ18_08555) tmaR 1842917..1843246 (+) 330 WP_000450409.1 DUF496 family protein -
  KFQ18_RS08655 (KFQ18_08560) - 1843347..1843790 (-) 444 WP_001578566.1 EutP/PduV family microcompartment system protein -
  KFQ18_RS08660 (KFQ18_08565) pduU 1843795..1844145 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4740

>NTDB_id=490850 KFQ18_RS08630 WP_275877626.1 1838095..1839522(-) (sbcB) [Escherichia coli strain XJ6.1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYSWSWQHDNSRWDLLDVMRACYALRPEGINWPENDEG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=490850 KFQ18_RS08630 WP_275877626.1 1838095..1839522(-) (sbcB) [Escherichia coli strain XJ6.1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACTCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGAAGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577