Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   SESEC_RS10220 Genome accession   NC_017582
Coordinates   2166315..2167088 (+) Length   257 a.a.
NCBI ID   WP_014623697.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus ATCC 35246     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2161315..2172088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SESEC_RS10210 rlmH 2164288..2164764 (-) 477 Protein_1982 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SESEC_RS10215 (SeseC_02611) htrA 2164972..2166195 (+) 1224 WP_014623696.1 S1C family serine protease Regulator
  SESEC_RS10220 (SeseC_02613) spo0J 2166315..2167088 (+) 774 WP_014623697.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29174.83 Da        Isoelectric Point: 9.7975

>NTDB_id=49083 SESEC_RS10220 WP_014623697.1 2166315..2167088(+) (spo0J) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
MTEILMHIPIEDIVTNPYQPRLQFNQKELEELAHSIQANGLIQPIIVRKSDVFGYELVAGERRFKAAKLAGLQKIPAIVK
EISTLESMQQAIVENLQRSNLNAIEEAKAYQLLIDKNKMTHEDIATYMGKSRPYISNTIRLLQLPDVIRQAIEDGTISAG
HARALLSLSTPKEQELYFHNILDQGLSVRQIEQLVKTKHPPKKRNKHKTIFVKSLEKELSKSLGLPVALSLQKNDSGQLQ
LSFSNQEELNRIINKLL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=49083 SESEC_RS10220 WP_014623697.1 2166315..2167088(+) (spo0J) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
ATGACAGAAATCCTAATGCACATTCCTATCGAGGATATTGTGACAAATCCTTATCAACCACGTCTTCAATTTAATCAAAA
AGAGCTTGAGGAGCTGGCACATTCCATTCAGGCTAATGGTTTGATTCAACCAATCATTGTCAGAAAATCTGATGTATTTG
GCTATGAATTAGTCGCTGGAGAACGACGCTTTAAAGCAGCCAAGCTGGCAGGACTTCAAAAGATTCCAGCAATTGTTAAG
GAAATCTCTACTCTTGAGAGCATGCAGCAGGCCATCGTAGAAAACCTACAGCGCTCAAATTTAAATGCTATTGAAGAGGC
TAAGGCCTATCAATTACTTATTGATAAAAATAAGATGACCCATGAGGACATCGCGACATACATGGGAAAATCACGCCCTT
ATATCAGCAACACCATCAGACTGCTGCAATTACCAGACGTTATTAGACAAGCGATTGAGGACGGTACCATTAGCGCCGGC
CATGCAAGAGCTTTATTATCCTTGTCAACACCAAAAGAGCAGGAGCTTTATTTTCACAACATTCTGGATCAAGGCTTAAG
CGTTAGGCAAATCGAACAGCTGGTAAAGACTAAGCATCCCCCAAAAAAAAGAAACAAACATAAAACCATTTTTGTGAAGT
CTTTAGAAAAAGAGCTCTCAAAATCATTAGGATTACCTGTGGCATTGTCTCTCCAAAAAAATGACAGTGGGCAGCTGCAA
CTGTCATTTTCAAACCAAGAAGAATTGAACAGAATTATCAACAAGTTGCTTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

62.109

99.611

0.619


Multiple sequence alignment