Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KFQ11_RS02070 Genome accession   NZ_CP074354
Coordinates   424476..425153 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain XJ5.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419476..430153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ11_RS02055 (KFQ11_01995) chiA 420834..423536 (+) 2703 Protein_406 bifunctional chitinase/lysozyme -
  KFQ11_RS02060 (KFQ11_02000) bfd 423705..423899 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  KFQ11_RS02065 (KFQ11_02005) bfr 423971..424447 (+) 477 WP_000675504.1 bacterioferritin -
  KFQ11_RS02070 (KFQ11_02010) pilD 424476..425153 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  KFQ11_RS02075 (KFQ11_02015) gspM 425153..425614 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  KFQ11_RS02080 (KFQ11_02020) - 425611..426222 (-) 612 Protein_411 type II secretion system protein GspL -
  KFQ11_RS02085 (KFQ11_02025) - 426274..426971 (+) 698 WP_094096600.1 IS1-like element IS1A family transposase -
  KFQ11_RS02090 (KFQ11_02030) gspC 426983..427525 (-) 543 Protein_413 type II secretion system protein GspC -
  KFQ11_RS02095 (KFQ11_02035) gspA 427705..429174 (+) 1470 WP_282318329.1 type II secretion system protein GspA -
  KFQ11_RS02100 (KFQ11_02040) gspB 429176..429595 (+) 420 WP_000461449.1 putative general secretion pathway protein GspB -
  KFQ11_RS02105 (KFQ11_02045) rpsJ 429833..430144 (+) 312 WP_001181004.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=490749 KFQ11_RS02070 WP_000178161.1 424476..425153(-) (pilD) [Escherichia coli strain XJ5.2]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=490749 KFQ11_RS02070 WP_000178161.1 424476..425153(-) (pilD) [Escherichia coli strain XJ5.2]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCTCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378