Detailed information NTG0490728

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KGQ53_RS19980
• Genome accession: NZ_CP074120
• Coordinates: 4174623..4175615 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4169623..4180615

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KGQ53_RS19950	ispD	4169684..4170394 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KGQ53_RS19955	ispF	4170394..4170873 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KGQ53_RS19960	truD	4170870..4171919 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KGQ53_RS19965	surE	4171900..4172661 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KGQ53_RS19970	pcm	4172655..4173281 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KGQ53_RS19975	nlpD	4173466..4174560 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KGQ53_RS19980	rpoS	4174623..4175615 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KGQ53_RS19985	ygbN	4175709..4177073 (-)	1365	WP_000104441.1	GntP family transporter	-
KGQ53_RS19990	ygbM	4177162..4177938 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KGQ53_RS19995	ygbL	4177943..4178581 (-)	639	WP_001278994.1	aldolase	-
KGQ53_RS20000	otnK	4178578..4179840 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=490728 KGQ53_RS19980 WP_000081550.1 4174623..4175615(+) (rpoS) [Escherichia coli strain EC16]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=490728 KGQ53_RS19980 WP_000081550.1 4174623..4175615(+) (rpoS) [Escherichia coli strain EC16]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715