Detailed information NTG0490604

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KE639_RS15560
• Genome accession: NZ_CP074111
• Coordinates: 3383504..3384502 (-)
• Length: 332 a.a.
• NCBI ID: WP_030190975.1
• Uniprot ID: A0A6B3QQG4
• Organism: Streptomyces sp. V17-9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3378504..3389502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KE639_RS15540 (KE639_03100)	-	3378587..3379348 (-)	762	WP_102929025.1	DeoR/GlpR family DNA-binding transcription regulator	-
KE639_RS15545 (KE639_03101)	-	3379536..3381152 (-)	1617	WP_102929026.1	MFS transporter	-
KE639_RS15550 (KE639_03102)	-	3381216..3382187 (+)	972	WP_212730398.1	YafY family protein	-
KE639_RS15555 (KE639_03103)	-	3382224..3382994 (-)	771	WP_212730399.1	TetR family transcriptional regulator	-
KE639_RS15560 (KE639_03104)	rpoS	3383504..3384502 (-)	999	WP_030190975.1	sigma-70 family RNA polymerase sigma factor	Regulator
KE639_RS15565 (KE639_03105)	-	3384716..3385234 (+)	519	WP_212730400.1	GNAT family N-acetyltransferase	-
KE639_RS15570 (KE639_03106)	-	3385308..3386069 (-)	762	WP_102929030.1	class III extradiol ring-cleavage dioxygenase	-
KE639_RS15575 (KE639_03107)	-	3386191..3386682 (+)	492	WP_102929031.1	MarR family transcriptional regulator	-
KE639_RS15580 (KE639_03108)	-	3386792..3388339 (-)	1548	WP_102929045.1	MFS transporter	-
KE639_RS15585 (KE639_03109)	-	3388540..3389193 (-)	654	WP_125630880.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37154.81 Da
• Isoelectric Point: 4.9068

>NTDB_id=490604 KE639_RS15560 WP_030190975.1 3383504..3384502(-) (rpoS) [Streptomyces sp. V17-9]
MATRAVARRKSATGETSGSATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=490604 KE639_RS15560 WP_030190975.1 3383504..3384502(-) (rpoS) [Streptomyces sp. V17-9]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCTCGGCAACCAGCGTCCGCGCGAACGG
CGGCGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCCCGGACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGGTCCTCGAAGGGTACGAGGAGACCGGGGCGGAC
GCCACCCGTGAGGAACTCCAGGCCCTGATCGACGAGGGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTCGCGGTGGCCCGCCGCTACCCGCGCAGCGGTCTGCCGCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGGTCCATCGCCGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGAGCCGGAGCCCGCCGAGATCGCGGCCGAGCTGGGCTCCACGCCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCCGTGTCGCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGGCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAG
AAGCTGGCCCGCGACACCGGCTTCGAGGCGGCCGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

3D structure

• AlphaFold DB: A0A6B3QQG4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364