Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KE639_RS09300 Genome accession   NZ_CP074111
Coordinates   1963732..1966791 (-) Length   1019 a.a.
NCBI ID   WP_212729891.1    Uniprot ID   -
Organism   Streptomyces sp. V17-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958732..1971791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE639_RS09280 (KE639_01854) - 1959970..1960926 (+) 957 WP_212729889.1 hypothetical protein -
  KE639_RS09285 (KE639_01855) - 1960981..1961406 (-) 426 WP_102931965.1 Rieske (2Fe-2S) protein -
  KE639_RS09290 (KE639_01856) - 1961651..1962766 (+) 1116 WP_212732392.1 LacI family DNA-binding transcriptional regulator -
  KE639_RS09295 (KE639_01857) - 1962763..1963671 (+) 909 WP_212729890.1 carbohydrate kinase -
  KE639_RS09300 (KE639_01858) uvrA 1963732..1966791 (-) 3060 WP_212729891.1 excinuclease ABC subunit UvrA Machinery gene
  KE639_RS09305 (KE639_01859) - 1967014..1967700 (+) 687 WP_165284906.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  KE639_RS09310 (KE639_01860) - 1967754..1968410 (+) 657 WP_125632632.1 MBL fold metallo-hydrolase -
  KE639_RS09315 (KE639_01861) aroQ 1968680..1969153 (-) 474 WP_212729892.1 type II 3-dehydroquinate dehydratase -
  KE639_RS09320 (KE639_01862) - 1969258..1970304 (+) 1047 WP_212729893.1 S66 peptidase family protein -
  KE639_RS09325 (KE639_01863) - 1970318..1971418 (-) 1101 WP_102930230.1 ionic transporter y4hA -

Sequence

Protein


Download         Length: 1019 a.a.        Molecular weight: 111547.71 Da        Isoelectric Point: 7.9856

>NTDB_id=490590 KE639_RS09300 WP_212729891.1 1963732..1966791(-) (uvrA) [Streptomyces sp. V17-9]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECHRPISRQSPQAIVDKVLELPEGSRFQVLSPLVRERK
GEFVDLFSDLQTKGYSRARVDGETVQLSNPPTLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCSGIGTRMEVDPELIVPDEDKSLDEGAIHPWSHGHTK
DYFGRLIGALADALGFRTDIPFAGLPLRARKALLNGHKTQVEVRYRNRYGRERRYTTAFEGAIPFVKRRHSEAESDSSRE
RFEGYMREVPCPTCEGTRLKPLVLAVTVMGKSIAEVSAMSISDCADFLGELTLNARDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WIVDIGPGAGEHGGKVVHSGSVKELLDNAESQTGLYLSGRKAIPLPDIRRPQDPSRRLTVHGARENNLQDIDVSFPLGVF
TAVTGVSGSGKSTLVNDILYTHLARELNGARNVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHIRKLFA
ETTEAKVRGYLPGRFSFNVKGGRCENCAGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIADVLNMPIEEA
TDFFEAVPAISRHMKTLKDVGLGYVRLGQSATTLSGGEAQRVKLASELQRRSTGRTVYVLDEPTTGLHFEDISKLLTVLG
GLVDKGNTVIVIEHNLDVIKTADWVVDMGPEGGAGGGLVVAEGTPEQVAGVPASHTGKFLRDVLGADRVSDAAPVTRPRK
AAKTVATKAAARKTATKTVTATAAKKATAAKAAKTAKTVKTAKTAATPAAKKTTRTSKA

Nucleotide


Download         Length: 3060 bp        

>NTDB_id=490590 KE639_RS09300 WP_212729891.1 1963732..1966791(-) (uvrA) [Streptomyces sp. V17-9]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAACGTCTCGCTCGACCTGCCTCGTGACTCGCT
CATCGTCTTCACGGGCCTGTCCGGGTCGGGCAAGTCCTCCCTGGCCTTCGACACCATCTTCGCCGAAGGCCAGCGGCGCT
ACGTGGAGTCGCTCTCCTCCTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATTGAGGGCCTC
TCCCCGGCGGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCCACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTGCGCCTGCTCTTCGCCCGCATCGGCAAGCCGCACTGTCCCGAGTGCCACCGGCCCATCTCGCGCCAGTCGCCGC
AGGCCATCGTCGACAAGGTCCTGGAGCTGCCGGAGGGCAGCCGCTTCCAGGTGCTGTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCTCCGACCTCCAGACCAAGGGCTACTCCCGCGCGCGGGTGGACGGCGAGACCGTCCAGCT
GTCCAACCCGCCCACGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACGGTGAAGGACTCCG
CCAAGCGGCGCCTGACCGACTCCGTGGAGACCGCGCTCGGCCTGTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGCATGTACTCGGAGCACCTGTACTGCCCGTACGACGACCTGTCCTTCGAAGAGCT
CGAGCCCCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCTCCGGCATCGGCACCCGCATGGAGGTCG
ACCCGGAGCTGATCGTCCCCGACGAGGACAAGTCCCTCGACGAGGGCGCCATCCACCCCTGGTCGCACGGGCACACCAAG
GACTACTTCGGCCGCCTGATCGGCGCCCTCGCCGACGCGCTCGGCTTCCGCACGGACATCCCCTTCGCGGGCCTGCCGCT
GCGCGCCCGCAAGGCCCTGCTGAACGGCCACAAGACCCAGGTCGAGGTCCGCTACCGCAACCGGTACGGCCGCGAGCGCC
GGTACACCACGGCCTTCGAGGGCGCGATCCCCTTCGTCAAGCGCCGGCACAGCGAGGCCGAGAGCGACTCCAGCCGCGAG
CGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCACCTGTGAGGGCACCCGCCTCAAGCCCCTCGTCCTCGCGGTCAC
CGTCATGGGCAAGTCGATCGCCGAGGTCTCGGCGATGTCCATCAGCGACTGCGCGGACTTCCTGGGCGAGCTGACGCTCA
ACGCCCGCGACAAGAAGATCGCCGAGCGCGTGCTGAAGGAGGTCAACGAACGGCTGCGGTTCCTGGTCGACGTCGGCCTG
GACTACCTCTCGCTGAACCGCGCGGCGGGCACCCTCTCCGGCGGCGAGGCCCAGCGCATCCGGCTGGCCACCCAGATCGG
CTCCGGACTCGTCGGCGTGCTGTACGTCCTGGACGAGCCGTCCATCGGCCTGCACCAGCGCGACAACCACCGGCTGATCG
AGACCCTCGTCCGGCTCCGGGACATGGGCAACACCCTGATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCGGAC
TGGATCGTCGACATCGGCCCCGGCGCGGGCGAGCACGGCGGCAAGGTGGTGCACAGCGGTTCCGTCAAGGAGCTGCTCGA
CAACGCCGAGTCGCAGACCGGGCTGTACCTGTCCGGACGCAAGGCCATTCCGCTGCCCGACATCCGGCGCCCGCAGGACC
CCTCCCGGCGCCTCACCGTGCACGGCGCCCGGGAGAACAACCTCCAGGACATCGACGTGTCCTTCCCGCTGGGCGTCTTC
ACCGCCGTCACCGGCGTCTCGGGCTCCGGCAAGTCGACGCTGGTCAACGACATCCTCTACACCCACCTGGCCCGCGAGCT
GAACGGCGCGCGGAACGTCCCGGGCAGGCACACGCGTGTGGACGGCGACGACCTCGTCGACAAGGTCGTCCATGTCGACC
AGTCGCCCATCGGCCGCACCCCGCGGTCGAACCCGGCGACGTACACCGGCGTCTTCGACCACATCCGCAAGCTGTTCGCC
GAGACGACGGAGGCGAAGGTCCGCGGCTACCTGCCCGGGCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CGCGGGCGACGGCACCATCAAGATCGAGATGAACTTCCTCCCGGACGTGTACGTCCCGTGCGAGGTCTGCCACGGCGCCC
GGTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGACGTGCTGAACATGCCGATCGAGGAGGCG
ACCGACTTCTTCGAGGCGGTCCCCGCCATCTCCCGGCACATGAAGACCCTCAAGGACGTCGGTCTCGGGTACGTCCGGCT
CGGCCAGTCCGCGACCACCCTGTCCGGCGGCGAGGCCCAGCGGGTCAAGCTCGCCAGCGAGCTGCAGCGCCGCTCCACCG
GACGCACGGTCTACGTCCTGGACGAGCCGACCACCGGTCTCCACTTCGAGGACATCAGCAAGCTGCTGACGGTCCTCGGC
GGCCTGGTCGACAAGGGCAACACCGTCATCGTCATCGAGCACAACCTCGACGTGATCAAGACCGCCGACTGGGTCGTCGA
CATGGGCCCCGAGGGCGGCGCCGGCGGTGGCCTGGTGGTCGCCGAGGGCACGCCCGAGCAGGTCGCGGGTGTCCCCGCCA
GCCACACCGGCAAGTTCCTCCGGGACGTCCTCGGCGCCGACCGGGTCAGCGACGCGGCCCCGGTGACCAGGCCGCGCAAG
GCGGCGAAGACGGTCGCGACCAAGGCGGCCGCCAGGAAGACCGCCACGAAGACGGTCACCGCCACGGCGGCCAAGAAGGC
GACCGCCGCCAAGGCGGCCAAGACCGCGAAGACGGTCAAGACGGCCAAGACGGCAGCCACGCCCGCCGCGAAGAAGACCA
CGCGGACGAGCAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

ABC transporter (ABC_tran)

(628-864)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.931

92.738

0.528
  uvrA Streptococcus pneumoniae TIGR4

56.931

92.738

0.528
  uvrA Streptococcus pneumoniae D39

56.931

92.738

0.528