Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ICN73_RS13765 Genome accession   NZ_CP062699
Coordinates   3074788..3075423 (+) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas taiwanensis strain WRS8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3069788..3080423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN73_RS13745 (ICN73_13745) - 3070049..3070981 (+) 933 WP_014754076.1 ABC transporter ATP-binding protein -
  ICN73_RS13750 (ICN73_13750) - 3070978..3071757 (+) 780 WP_003247128.1 ABC transporter permease -
  ICN73_RS13755 (ICN73_13755) - 3071767..3072273 (-) 507 Protein_2709 DUF2062 domain-containing protein -
  ICN73_RS13760 (ICN73_13760) comA 3072416..3074632 (+) 2217 WP_017147836.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ICN73_RS13765 (ICN73_13765) exbB 3074788..3075423 (+) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ICN73_RS13770 (ICN73_13770) - 3075420..3075854 (+) 435 WP_014754073.1 ExbD/TolR family protein -
  ICN73_RS13775 (ICN73_13775) lpxK 3075854..3076855 (+) 1002 WP_003247136.1 tetraacyldisaccharide 4'-kinase -
  ICN73_RS13780 (ICN73_13780) - 3076900..3077085 (+) 186 WP_003247142.1 Trm112 family protein -
  ICN73_RS13785 (ICN73_13785) kdsB 3077082..3077846 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ICN73_RS13790 (ICN73_13790) - 3077846..3078310 (+) 465 WP_014754072.1 low molecular weight protein-tyrosine-phosphatase -
  ICN73_RS13795 (ICN73_13795) murB 3078307..3079326 (+) 1020 WP_014754071.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=490568 ICN73_RS13765 WP_003247132.1 3074788..3075423(+) (exbB) [Pseudomonas taiwanensis strain WRS8]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=490568 ICN73_RS13765 WP_003247132.1 3074788..3075423(+) (exbB) [Pseudomonas taiwanensis strain WRS8]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCACTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825