Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   KFU85_RS23855 Genome accession   NZ_CP074052
Coordinates   4984433..4985842 (+) Length   469 a.a.
NCBI ID   WP_012602497.1    Uniprot ID   -
Organism   Escherichia coli strain PD23     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4979433..4990842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU85_RS23840 (KFU85_23665) typA 4979593..4981416 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  KFU85_RS23845 (KFU85_23670) glnA 4981789..4983198 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  KFU85_RS23850 (KFU85_23675) glnL 4983372..4984421 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  KFU85_RS23855 (KFU85_23680) luxO 4984433..4985842 (+) 1410 WP_012602497.1 nitrogen regulation protein NR(I) Regulator
  KFU85_RS23860 (KFU85_23685) yshB 4985954..4986064 (+) 111 WP_000893994.1 YshB family small membrane protein -
  KFU85_RS23865 (KFU85_23690) hemN 4986254..4987627 (-) 1374 WP_000116093.1 oxygen-independent coproporphyrinogen III oxidase -
  KFU85_RS23870 (KFU85_23695) yihI 4987816..4988325 (-) 510 WP_001572146.1 Der GTPase-activating protein YihI -
  KFU85_RS23875 - 4988444..4988610 (-) 167 Protein_4695 hypothetical protein -
  KFU85_RS23880 (KFU85_23700) yihA 4988907..4989539 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52239.77 Da        Isoelectric Point: 6.4561

>NTDB_id=490563 KFU85_RS23855 WP_012602497.1 4984433..4985842(+) (luxO) [Escherichia coli strain PD23]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLELRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=490563 KFU85_RS23855 WP_012602497.1 4984433..4985842(+) (luxO) [Escherichia coli strain PD23]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTCGCGCTGGTTGAGCGCGCCATCAGTCATTACCAAGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCATTTATCGCGCTGAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAAGCCGATGGTGGCACATTATTCCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACCCGTTTGCTGCGCGTACTGGCAGACGGTCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGTATTATCGCTGCTACTCACCAGAACCTGGAACTGCGCGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATTTGCCGCCACTGCGTGAGCGTCGGGAAGATATTCCCCGC
CTGGCACGCCATTTTTTACAGGTTGCCGCACGCGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GCTGACGCGTCTGGCATGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGTCGCTGGCTAACGGTGATGGCTGCCGGGC
AGGAAGTGTTGATCCAGGATTTGCCTGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGTTGGGCGACACTTTTAGCGCAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAACCTGCTTTCCGAAGCGCAGCC
TGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTAGGGATGGAGTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392