Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   IL331_RS19790 Genome accession   NZ_CP062698
Coordinates   4149993..4152080 (+) Length   695 a.a.
NCBI ID   WP_218081076.1    Uniprot ID   -
Organism   Anthocerotibacter panamensis C109     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4144993..4157080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL331_RS19770 - 4145304..4146476 (-) 1173 WP_218081073.1 hypothetical protein -
  IL331_RS19775 - 4146646..4147629 (-) 984 WP_218081074.1 aldo/keto reductase -
  IL331_RS19780 - 4147734..4148489 (-) 756 WP_218081075.1 transporter -
  IL331_RS19785 - 4148961..4149725 (-) 765 WP_218083127.1 RNA polymerase sigma factor SigF -
  IL331_RS19790 pilB/pilB1 4149993..4152080 (+) 2088 WP_218081076.1 GspE/PulE family protein Machinery gene
  IL331_RS19795 - 4152107..4153261 (+) 1155 WP_245395530.1 type IV pilus twitching motility protein PilT -
  IL331_RS19800 - 4153295..4154527 (+) 1233 WP_218081077.1 type II secretion system F family protein -
  IL331_RS19805 - 4154656..4156329 (+) 1674 WP_218081078.1 TonB family protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 78115.24 Da        Isoelectric Point: 4.9312

>NTDB_id=490549 IL331_RS19790 WP_218081076.1 4149993..4152080(+) (pilB/pilB1) [Anthocerotibacter panamensis C109]
MNSNNLPAPVPPSSSNNQNASGTGSLPATPTSRRALVTRSAITPFREKLVRVGVVTDEDYQRALEERRNTQDRNSRSLIE
ILEEISGHNLPPELVREFKVQQLVELQLLYGIESFDFQQQKGLFETDQVRQLITDLMMPLELCTRYRLMPVQQVESTVII
AMVDPENLEALDDLNRRLKNKGFTLQRIAITPEDYQVLLARCLDSQANDLPPEATPEQAEEVREYIEGLGDFLEIEDETT
QDLAEVARLAEDAPIIKLSNSILLRAIEQKVSDIHIEPQDEDLRIRFRKDGVLREAPAGMGHLPKKIIPALLSRFKIMSD
LNIAERRVPQDGRIRRVYQNRTIDFRVSTLPSRYGEKMVLRLLDNTSTKLGLDQLITDPSTLAVVRDMVSKPYGLILVTG
PTGSGKTTTLYSALAERNDPGVNITTAEDPIEYTMAGISQVQVIRDKGMDFARILRAFLRQDPDIMLVGETRDLETAKVS
VEAALTGHLVLTTLHTNDAPGAIARLSEMGVEPFLVSSSLLGIVAQRLMRKVCSECSTPYNPDPERLRQFGLVSAREKDV
IFYRAATYTPQQVEQRRQNNEHICSSCNGVGYRGRVGVYEVLSITNKLRDLITREASTELLREAAVEEGMNTLLMYSLNL
VRQGITTLEEVERVTLSDSGLEVGKRRVLVCRTCEAELLPEWIDCPYCTTPRIQT

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=490549 IL331_RS19790 WP_218081076.1 4149993..4152080(+) (pilB/pilB1) [Anthocerotibacter panamensis C109]
ATGAACAGCAATAACTTACCCGCTCCCGTACCACCATCTTCTTCTAATAACCAGAACGCTAGCGGCACGGGTAGCTTGCC
TGCCACTCCTACTTCACGCCGTGCCCTAGTTACCCGTAGCGCCATCACGCCCTTTCGGGAGAAACTGGTCCGCGTAGGGG
TTGTTACGGATGAAGATTATCAACGGGCTCTAGAAGAGCGTAGAAACACGCAGGACCGCAATAGCCGCTCCCTCATTGAG
ATCCTAGAGGAGATTAGCGGTCACAACCTCCCTCCAGAGTTGGTGCGGGAGTTTAAAGTACAGCAGTTGGTGGAGCTACA
GTTGCTCTACGGCATTGAGTCCTTTGATTTTCAGCAACAAAAAGGTCTCTTCGAGACCGATCAGGTGCGTCAGCTCATCA
CCGACCTGATGATGCCCCTGGAGTTGTGCACACGCTACCGTCTCATGCCTGTGCAACAGGTGGAATCCACGGTGATCATC
GCCATGGTGGACCCGGAGAACCTCGAAGCCCTTGACGACCTCAACCGCCGCCTCAAGAACAAAGGCTTCACCCTCCAACG
TATCGCCATTACCCCTGAAGACTACCAAGTGCTCCTCGCCCGTTGCCTGGATTCCCAAGCCAACGACCTACCCCCTGAAG
CCACCCCTGAGCAGGCGGAAGAAGTCCGTGAATATATCGAGGGGCTGGGCGACTTTTTGGAGATTGAAGACGAGACCACT
CAAGATTTGGCGGAAGTTGCCCGTCTGGCGGAAGATGCCCCGATTATCAAGCTCTCCAATTCAATTTTGCTGAGAGCCAT
CGAGCAGAAAGTCTCCGATATCCACATTGAACCCCAGGATGAGGACCTGCGTATTCGTTTTCGCAAGGACGGGGTTTTGC
GCGAAGCCCCCGCCGGGATGGGACATCTGCCCAAAAAAATCATCCCCGCCCTACTCTCGCGCTTCAAAATTATGTCGGAC
CTCAACATTGCCGAGCGCCGGGTGCCTCAGGATGGCAGGATTCGCCGCGTCTATCAGAACCGGACTATCGACTTTCGGGT
GAGCACGCTGCCCTCGCGCTACGGCGAGAAGATGGTCCTGCGGCTTTTGGACAACACTTCCACCAAACTAGGGCTCGACC
AGCTCATCACCGACCCTTCGACTCTGGCGGTGGTCCGCGATATGGTCTCCAAACCCTACGGGCTGATCCTGGTCACCGGA
CCCACCGGCTCCGGGAAGACCACAACCCTCTATTCGGCTTTAGCAGAGCGCAATGACCCTGGGGTCAACATCACCACCGC
CGAGGACCCGATTGAATACACGATGGCGGGGATCTCGCAGGTGCAGGTTATCCGCGACAAGGGAATGGATTTTGCCCGCA
TCCTGAGAGCTTTTTTGCGTCAAGACCCGGACATTATGCTTGTCGGAGAGACGCGGGATTTGGAGACGGCCAAAGTTTCG
GTCGAAGCTGCCCTCACCGGTCACCTCGTGCTCACCACGCTCCACACCAATGATGCCCCTGGAGCCATTGCCCGTCTATC
CGAGATGGGCGTGGAGCCCTTCTTGGTCTCTAGTTCCCTGTTGGGGATCGTAGCGCAGCGGCTGATGCGCAAGGTCTGCT
CAGAATGTTCGACCCCCTACAACCCCGATCCTGAGCGCTTGCGCCAGTTTGGTCTGGTCTCTGCCCGCGAAAAAGATGTT
ATTTTTTACCGGGCGGCCACCTATACCCCCCAACAAGTCGAGCAGCGCCGTCAAAACAACGAGCACATCTGTTCGTCGTG
CAATGGGGTGGGCTATAGAGGGCGCGTCGGGGTCTACGAGGTTCTGAGCATCACCAACAAGCTGCGCGATCTCATCACCC
GCGAAGCGAGCACGGAACTGTTGCGGGAGGCTGCCGTCGAAGAGGGGATGAATACGCTTTTGATGTATTCGCTCAATCTG
GTACGCCAGGGGATCACGACCTTGGAGGAAGTGGAGCGGGTCACCCTCTCTGACTCCGGGCTGGAAGTGGGTAAGCGCCG
GGTCCTCGTCTGCCGGACTTGCGAAGCTGAATTACTCCCTGAATGGATCGATTGTCCCTATTGCACAACCCCCCGGATTC
AGACCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(102-207)

Type II/IV secretion system protein (T2SSE)

(261-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

53.698

97.266

0.522