Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IL331_RS16835 Genome accession   NZ_CP062698
Coordinates   3559944..3561329 (+) Length   461 a.a.
NCBI ID   WP_218080520.1    Uniprot ID   -
Organism   Anthocerotibacter panamensis C109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3554944..3566329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL331_RS16815 - 3556410..3557825 (-) 1416 WP_218080516.1 ATPase domain-containing protein -
  IL331_RS16820 - 3557815..3558228 (-) 414 WP_218080517.1 hypothetical protein -
  IL331_RS16825 - 3558238..3559458 (-) 1221 WP_218080518.1 ATP-binding protein -
  IL331_RS16830 - 3559656..3559907 (+) 252 WP_218080519.1 UPF0175 family protein -
  IL331_RS16835 radA 3559944..3561329 (+) 1386 WP_218080520.1 DNA repair protein RadA Machinery gene
  IL331_RS16840 - 3561351..3561680 (-) 330 WP_218080521.1 P-II family nitrogen regulator -
  IL331_RS16845 - 3561683..3562918 (-) 1236 WP_218080522.1 efflux RND transporter periplasmic adaptor subunit -
  IL331_RS16850 - 3562937..3566062 (-) 3126 WP_218080523.1 efflux RND transporter permease subunit -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49515.10 Da        Isoelectric Point: 5.5904

>NTDB_id=490547 IL331_RS16835 WP_218080520.1 3559944..3561329(+) (radA) [Anthocerotibacter panamensis C109]
MPKIKSLFQCSTCGAESPRWLGRCTECGEWNTLVEQVVHTQTTTTRKKSPSPTSQPLRAQPIQAITQEDYARLDSGYGEL
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVAQKLARDHKILYLSGEESMQQVKMRADRLQVQKEALFLLSETDLEVILE
ELEALKPTCAVIDSIQSVYLSGLTSAPGSVSQVRECTAALMRMAKREGISLFIVGHVTKEGAIAGPKVLEHLVDTVLYFE
GDRFQSYRLLRSVKNRFGATYEIGIFEMTGGGLSEVENPSQLFLSNGEERNSGTAVTVACEGTRPLVVEVQALVSPTSYP
SPRRTVTGLEYNRFLQILAVLEKRVGVPLSRLDAYVSLVGGLTVNEPAADLGVAIAIAASFRDLMVDAGTVVIGEVGLGG
QVRPVPQLEIRLKEAAKLGFTRAIVPKGNLPEVAGLQLVPVGRVLEALLAALPEAAGEETP

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=490547 IL331_RS16835 WP_218080520.1 3559944..3561329(+) (radA) [Anthocerotibacter panamensis C109]
ATGCCCAAGATCAAGTCACTCTTTCAATGCTCCACCTGTGGAGCTGAGTCACCGCGTTGGCTCGGGCGCTGTACCGAGTG
TGGGGAGTGGAATACGTTGGTCGAGCAGGTAGTCCATACCCAAACGACCACCACCCGCAAAAAAAGCCCCTCGCCCACAA
GCCAACCCCTACGTGCCCAACCGATTCAAGCTATCACCCAAGAGGACTATGCCCGCCTCGACTCAGGCTATGGGGAGTTA
AACCGCGTCTTGGGGGGCGGGGTGGTGCCCGGTTCGCTCGTGTTGATCGGGGGCGATCCGGGGATTGGCAAGAGTACGCT
CTTGCTGCAAGTGGCCCAAAAACTCGCCCGTGACCACAAAATCCTCTACCTGTCTGGCGAAGAGTCGATGCAGCAGGTGA
AAATGCGTGCCGACCGGCTCCAAGTCCAAAAAGAAGCGCTCTTTTTATTGTCAGAGACCGATCTAGAGGTGATTTTAGAA
GAACTAGAGGCGCTCAAACCTACCTGTGCGGTCATCGACAGTATCCAATCGGTCTATCTGAGTGGGCTGACCTCGGCTCC
CGGTTCGGTCTCGCAGGTGCGTGAGTGTACAGCGGCCTTGATGCGGATGGCGAAGCGCGAGGGGATCAGTCTTTTTATTG
TCGGGCATGTCACTAAAGAAGGGGCAATCGCCGGACCCAAGGTGCTGGAGCATTTGGTGGATACGGTGTTGTACTTCGAG
GGCGACCGTTTCCAGAGCTATCGCCTCCTGCGCTCGGTAAAAAACCGTTTTGGGGCGACCTATGAGATTGGCATTTTTGA
GATGACGGGCGGAGGACTCAGCGAGGTGGAAAATCCTTCGCAGTTGTTTCTATCCAATGGGGAGGAGCGCAATTCGGGGA
CAGCGGTGACGGTGGCGTGTGAGGGGACGCGCCCCTTGGTGGTGGAGGTGCAGGCGTTGGTCAGCCCGACGAGCTATCCT
TCCCCCCGCCGCACGGTGACAGGTCTGGAGTACAATCGCTTCTTGCAAATCTTAGCGGTACTGGAGAAACGCGTCGGGGT
GCCGCTCTCGCGGCTCGATGCCTATGTCTCTTTGGTGGGCGGGCTCACGGTCAACGAACCGGCGGCGGACTTGGGGGTGG
CGATTGCGATAGCGGCGAGTTTCCGCGACTTGATGGTGGACGCAGGGACCGTGGTGATCGGGGAAGTGGGCTTGGGGGGG
CAAGTACGCCCGGTCCCACAGCTAGAAATTCGTCTCAAGGAAGCGGCTAAGTTGGGGTTCACCCGCGCGATTGTCCCTAA
AGGAAACCTGCCGGAGGTCGCGGGGCTACAGTTGGTTCCGGTGGGTCGGGTGCTAGAGGCGTTGCTTGCTGCCTTGCCGG
AAGCGGCGGGGGAGGAGACGCCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(368-429)

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.509

98.915

0.529
  radA Streptococcus pneumoniae Rx1

49.446

97.831

0.484
  radA Streptococcus pneumoniae D39

49.446

97.831

0.484
  radA Streptococcus pneumoniae R6

49.446

97.831

0.484
  radA Streptococcus pneumoniae TIGR4

49.446

97.831

0.484
  radA Streptococcus mitis NCTC 12261

50.93

93.275

0.475
  radA Streptococcus mitis SK321

50.93

93.275

0.475