Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   IHV80_RS19275 Genome accession   NZ_CP062501
Coordinates   655732..656826 (+) Length   364 a.a.
NCBI ID   WP_192891910.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 650732..661826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS19245 - 652497..652733 (-) 237 WP_102434211.1 hypothetical protein -
  IHV80_RS19250 - 652900..653526 (-) 627 WP_192891907.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  IHV80_RS19255 - 653678..653992 (-) 315 WP_017105326.1 DUF496 family protein -
  IHV80_RS19260 - 654188..654388 (+) 201 WP_192891908.1 hypothetical protein -
  IHV80_RS19265 - 654452..655108 (+) 657 WP_192892176.1 YceH family protein -
  IHV80_RS19270 - 655109..655423 (+) 315 WP_192891909.1 GIY-YIG nuclease family protein -
  IHV80_RS19275 luxP 655732..656826 (+) 1095 WP_192891910.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  IHV80_RS19280 luxQ 656826..659402 (+) 2577 WP_192891911.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  IHV80_RS19285 - 659498..660157 (-) 660 WP_192891912.1 PilZ domain-containing protein -
  IHV80_RS19290 - 660355..660705 (+) 351 WP_192891913.1 HopJ type III effector protein -
  IHV80_RS19295 - 660808..661116 (-) 309 WP_192891914.1 cysteine-rich CWC family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41311.51 Da        Isoelectric Point: 4.9668

>NTDB_id=490532 IHV80_RS19275 WP_192891910.1 655732..656826(+) (luxP) [Vibrio bathopelagicus strain Sal10]
MKRLLMLLGLAVFSASALSHGTHVLNGYWEYQDYLSKFPEQKALTDKMVEAVQNHPVPLRKIQDEPITISVVYPGQQISD
YWVRNIEAFEKRLDRLRINYQINQVFTRVNADITQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLTSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLAEYFKNNSKSDSQYSVLYRSEGYISDARGDTFIHEVNTDTNFALKSSFYTKSD
KESAYQAAKISIEKDKDLDFIYACATDVALGAADAIRESGRDILLNGWGGGSAELEAIEKGDLDVTVMRMNDDTGIAMAE
AIKWDLAGLEVPTVYSGDFELVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=490532 IHV80_RS19275 WP_192891910.1 655732..656826(+) (luxP) [Vibrio bathopelagicus strain Sal10]
ATGAAACGTTTACTTATGTTGTTGGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCATGGTACCCATGTCCTCAATGG
TTACTGGGAATACCAAGATTACCTTTCTAAATTTCCAGAGCAAAAAGCACTGACCGATAAAATGGTTGAAGCAGTGCAAA
ACCACCCGGTTCCGTTAAGAAAAATCCAAGATGAACCCATTACAATCTCTGTGGTGTATCCAGGGCAACAGATCTCCGAT
TACTGGGTTCGCAATATTGAGGCTTTTGAAAAAAGGCTCGATAGGCTAAGAATTAATTATCAGATCAATCAGGTCTTTAC
ACGAGTTAATGCGGATATCACCCAGCAAAGTATTTCATTACAAGAAGCTATCGAAAACAAAACGGACTACTTAATTTTTA
CTCTTGATACCACTCGTCATCGTAAATTTATTGAACATGTTTTGACGTCAACGGATACCAAGTTGATTCTTCAGAATATC
ACTACACCAGTTCGAGCGTGGGCTGATAGACAGCCATTCATGTACGTGGGTTTTGACCATGCGACAGGCAGCTTAAAATT
GGCGGAGTACTTTAAAAATAACAGTAAATCAGACAGCCAATATTCGGTTTTGTACCGTTCAGAAGGCTATATCAGTGATG
CTCGCGGTGATACTTTTATCCACGAAGTGAACACCGATACGAACTTTGCACTCAAGTCCTCCTTTTATACTAAGTCTGAC
AAAGAAAGCGCCTATCAAGCGGCGAAAATCAGCATAGAGAAGGATAAAGACCTAGACTTTATTTATGCATGTGCAACTGA
TGTGGCACTGGGTGCTGCAGATGCGATTCGTGAATCAGGCAGAGATATTCTTCTTAACGGATGGGGCGGAGGCTCTGCCG
AACTTGAAGCTATCGAAAAAGGTGATCTAGACGTGACTGTGATGCGGATGAATGATGACACTGGCATTGCGATGGCAGAA
GCCATTAAATGGGATCTGGCTGGTTTAGAAGTGCCTACCGTGTATTCTGGTGATTTTGAATTGGTCACCAAAGAAGATTC
TCCCGAACGTATTTCTGAACTCAAACAGCGGGCATTTAGATACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.022

100

0.624