Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   IHV80_RS15035 Genome accession   NZ_CP062500
Coordinates   3355729..3356733 (+) Length   334 a.a.
NCBI ID   WP_192889526.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3350729..3361733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS15020 - 3351113..3352402 (-) 1290 WP_102438466.1 malic enzyme-like NAD(P)-binding protein -
  IHV80_RS15025 rpmE 3352736..3352954 (-) 219 WP_192889524.1 50S ribosomal protein L31 -
  IHV80_RS15030 priA 3353287..3355488 (+) 2202 WP_192889525.1 primosomal protein N' -
  IHV80_RS15035 cytR 3355729..3356733 (+) 1005 WP_192889526.1 DNA-binding transcriptional regulator CytR Regulator
  IHV80_RS15040 - 3356856..3357395 (+) 540 WP_065104139.1 SPOR domain-containing protein -
  IHV80_RS15045 hslV 3357619..3358167 (+) 549 WP_192889527.1 ATP-dependent protease subunit HslV -
  IHV80_RS15050 hslU 3358226..3359566 (+) 1341 WP_192889528.1 HslU--HslV peptidase ATPase subunit -
  IHV80_RS15055 - 3359722..3360639 (+) 918 WP_192889529.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  IHV80_RS15060 rraA 3360713..3361231 (+) 519 WP_192889530.1 ribonuclease E activity regulator RraA -
  IHV80_RS15065 zapB 3361350..3361592 (-) 243 WP_017104626.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36548.06 Da        Isoelectric Point: 6.6378

>NTDB_id=490525 IHV80_RS15035 WP_192889526.1 3355729..3356733(+) (cytR) [Vibrio bathopelagicus strain Sal10]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRHLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=490525 IHV80_RS15035 WP_192889526.1 3355729..3356733(+) (cytR) [Vibrio bathopelagicus strain Sal10]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACCGCAACGGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCGACTCGTAAACGAGTAGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTCGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCTTATTTCGCTGAGATCATCCGTGGT
ATCGAAGATGCTGCAGTAGAAAATGATTACCTAGTTCTGCTTGGCGACAGTGGCCAGCAGAAAAAGCGCGAATCATCATT
TGTTAACTTGGTATTCACCAAACAAGCTGACGGCATGCTGCTGTTAGGCACCGACCATCCATTTGATGTCAGTAAGCCTG
AACAAAAGAATCTACCGCCTATGGTTATGGCGTGTGAATTTGCACCCGAGCTTGAATTACCAACGGTACATATCGACAAC
CTGACCTCTGCATTTGAAGCCGTGAACTACCTAGCTCAATTAGGTCATAAGCGTATTGCTCAAATCTCTGGGCCAACCAC
TGCAACTCTGTGTAAGTTCCGCCAACAAGGTTACCAACAAGCACTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA
GCACAGTGGGCGACTTCACTTTTGAAGCTGGCGCGCAAGCAGTTCGTCACTTATTGGCACTTCCAGAGCAACCAACCGCG
ATTTTCTGTCACAACGATGCGATGGCAATTGGTGCGATTCAAGAAGCGAAAAAGTTAGGTTTACGTGTTCCCCAAGACTT
ATCGATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACGACTATTTCTCAACCTCGTTACG
AAATCGGACGCCAAGCGATGTTGATGATGCTCGACCTACTTAAAGGTAACGATGTGCAAGCAGGTTCACGCCTACTTGAA
GCCAAACTCGTGGTTCGTGGCAGCACAGCACCACCTCGAATTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.458

99.401

0.889
  cytR Vibrio parahaemolyticus RIMD 2210633

87.988

99.701

0.877