Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   IHV80_RS13725 Genome accession   NZ_CP062500
Coordinates   3110818..3111798 (-) Length   326 a.a.
NCBI ID   WP_192889403.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105818..3116798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS13715 - 3106585..3107919 (-) 1335 WP_076655932.1 site-specific integrase -
  IHV80_RS13720 mutS 3108094..3110679 (+) 2586 WP_404818283.1 DNA mismatch repair protein MutS -
  IHV80_RS13725 rpoS 3110818..3111798 (-) 981 WP_192889403.1 RNA polymerase sigma factor RpoS Regulator
  IHV80_RS13730 nlpD 3111896..3112810 (-) 915 WP_192889404.1 murein hydrolase activator NlpD -
  IHV80_RS13735 - 3112846..3113472 (-) 627 WP_017108696.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  IHV80_RS13740 surE 3113473..3114216 (-) 744 WP_192889405.1 5'/3'-nucleotidase SurE -
  IHV80_RS13745 truD 3114293..3115339 (-) 1047 WP_192889406.1 tRNA pseudouridine(13) synthase TruD -
  IHV80_RS13750 ispF 3115362..3115841 (-) 480 WP_004735397.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  IHV80_RS13755 ispD 3115844..3116545 (-) 702 WP_192889407.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37280.50 Da        Isoelectric Point: 5.4366

>NTDB_id=490515 IHV80_RS13725 WP_192889403.1 3110818..3111798(-) (rpoS) [Vibrio bathopelagicus strain Sal10]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKAETKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWFDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=490515 IHV80_RS13725 WP_192889403.1 3110818..3111798(-) (rpoS) [Vibrio bathopelagicus strain Sal10]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAGCCGAAACGAAAGAAGAGACTGAAGTTACATCTAAGAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTGTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTCT
TGCACTTCTCGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGCGGCTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGCACTATCCGTTTA
CCAATTCATGTTGTGAAAGAGCTGAATATCTACTTGCGTACTGCACGAGAGCTATCACAAAAACTTGACCACGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAACCAGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CCGTTGATACGCCGATTGGTGGTGATGGTGAGAAAGCGCTACTGGATATTATTCCAGACATCAACAACTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATAAAGAATTCGTTGATTTTCTGGTTTGATGAGCTGAACCCTAAACAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTATGAACCGTCAACATTAGAAGAAGTAGGCCGCGAAATCAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGTCGTCTACGTGAGATTCTAATCAAGCAAGGCTTGAACATGGAAAATCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 region 3 (Sigma70_r3)

(167-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.138

100

0.831