Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IHV80_RS13450 Genome accession   NZ_CP062500
Coordinates   3057140..3057658 (-) Length   172 a.a.
NCBI ID   WP_192889377.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3052140..3062658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS13425 rimM 3052222..3052776 (-) 555 WP_009847609.1 ribosome maturation factor RimM -
  IHV80_RS13430 rpsP 3052803..3053051 (-) 249 WP_004735508.1 30S ribosomal protein S16 -
  IHV80_RS13435 ffh 3053264..3054658 (-) 1395 WP_192889374.1 signal recognition particle protein -
  IHV80_RS13440 - 3054859..3055653 (+) 795 WP_192889375.1 inner membrane protein YpjD -
  IHV80_RS13445 - 3055781..3057052 (+) 1272 WP_192889376.1 HlyC/CorC family transporter -
  IHV80_RS13450 luxS 3057140..3057658 (-) 519 WP_192889377.1 S-ribosylhomocysteine lyase Regulator
  IHV80_RS13455 - 3057683..3058333 (-) 651 WP_192889378.1 hypothetical protein -
  IHV80_RS13460 gshA 3058344..3059912 (-) 1569 WP_192889379.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18907.62 Da        Isoelectric Point: 4.4820

>NTDB_id=490512 IHV80_RS13450 WP_192889377.1 3057140..3057658(-) (luxS) [Vibrio bathopelagicus strain Sal10]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=490512 IHV80_RS13450 WP_192889377.1 3057140..3057658(-) (luxS) [Vibrio bathopelagicus strain Sal10]
ATGCCTTTATTAGATAGTTTTACTGTTGATCATACACGCATGAACGCCCCTGCAGTTCGTGTTGCGAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACGGTATTTGACCTGCGTTTTACTGCACCAAACAAAGATATCCTATCTGAAAAAGGTATCC
ATACTTTAGAGCATCTATACGCTGGATTCATGCGAGCTCAACTGAATGGTTCAGACGTGGAGATCATTGATATTTCACCG
ATGGGTTGCCGCACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTAGCAGACGCTTGGTTAGCGGC
TATGCAAGATGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGTTGAACGAATACCAATGTGGTACTGCTGCAATGC
ACTCTTTGGATGAAGCGAAAGATATCGCCAATGCGATCATCGCTGCTGGTATCTCTGTAAACAAAAATGATGAACTGGCA
CTGCCAGAGTCGATGCTTCAAGAGCTTAAAATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884