Detailed information NTG0490506

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: IHV80_RS13180
• Genome accession: NZ_CP062500
• Coordinates: 2987049..2990438 (+)
• Length: 1129 a.a.
• NCBI ID: WP_192889339.1
• Uniprot ID: -
• Organism: Vibrio bathopelagicus strain Sal10
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2982049..2995438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHV80_RS13160	erpA	2982348..2982689 (-)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-
IHV80_RS13165	hemL	2982986..2984293 (+)	1308	WP_017106926.1	glutamate-1-semialdehyde 2,1-aminomutase	-
IHV80_RS13170	-	2984614..2985699 (+)	1086	WP_192889337.1	AI-2E family transporter	-
IHV80_RS13175	rsmC	2985810..2986832 (+)	1023	WP_192889338.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
IHV80_RS13180	chiS	2987049..2990438 (+)	3390	WP_192889339.1	response regulator	Regulator
IHV80_RS13185	-	2991148..2992830 (+)	1683	WP_102437736.1	ABC transporter substrate-binding protein	-
IHV80_RS13190	-	2993000..2993986 (+)	987	WP_192889340.1	ABC transporter permease	-
IHV80_RS13195	-	2993989..2995014 (+)	1026	WP_192889341.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127248.98 Da
• Isoelectric Point: 5.3687

>NTDB_id=490506 IHV80_RS13180 WP_192889339.1 2987049..2990438(+) (chiS) [Vibrio bathopelagicus strain Sal10]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNSYQELLKRSDF
DDILLVDINGNVAYSVFKRDNYGTNLLTGKYKDSNLGVTFQRLAKDVTDKRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGSDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTLDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMLLIRSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDSS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQEELDSYNESGSYSHFQVPDLIDNTQQENSVISEDP
NGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDLLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIREDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRFETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=490506 IHV80_RS13180 WP_192889339.1 2987049..2990438(+) (chiS) [Vibrio bathopelagicus strain Sal10]
ATGTTTAGATTCTATCGAAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGTTGGCGTTTCTCGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATCTTTTTCCTCCAATCGCACAGTCAGGATCTTCAGGAACAAAGTACTTCGCACCTTGTTT
CGGTCCGTGATACTAAGCAGCAACAAATCGTCGATTACCTACAGGCACAAGAATCGCAAGTCATGGGCTTCGTTCGCTCA
GAGCTGGCCAATGCCAGTGGTGGGCGTTTCTACGGTTTAATCAATGCCTTTCAACGACTAGGCTTAGATATTGATGAAGC
GCGCAGTAATGCTCAACAGCGCTACATTCAAGGTTCAGGCGATCAAATCAAAACATCTATTCTTCCTGAGTCGAGCAGTT
TCATCGGAAGCGAACGCTATCGCTTGCTGCATAAGCGCTACCATAACTCATATCAAGAACTGCTTAAGCGTTCAGACTTT
GATGACATTCTATTAGTCGACATTAACGGTAACGTTGCTTACTCCGTATTTAAGCGTGATAACTACGGTACCAACTTACT
GACCGGCAAATACAAAGATTCAAACCTTGGGGTCACCTTTCAAAGGCTGGCTAAGGACGTAACAGACAAGCGTAAATCCA
ACGAAGATTACACCCCTGTTATCGTGTCTGATTTTAAAGACGAAAACGGCAAGCAAACCGCATGGCTCGGTGCACCTATT
GTTCAACAAGGGTACTTGCACAGCTATGCGATGTTTAGACTGCCAATTAACGGTATTACCAAGCTTATTGCGGATCTAAA
CAAAAGCTCTAATATTCAAACACTTCTTGTTGGTAGTGACCACTTACCTCGCAGCCTTGCTCACTCTCAAGAGTCAATTA
ACCTAAGCTTAGATGTTGTCGACAAAGCTCTAGCTGGTGAAACAGCAGTAGGCACGTTTGACAACACTCTCGATCAGGCG
ATCATCGCCGCTTACACCCCGATTGAGCTTAAATACGCAACATGGGCATTGGTTGTCGAACTGCCGGAAAAAGAGGCGTT
TGCTCGTATTCATCAATTAGAAAAGATCTTCGTGATTGTGATGCTGACAGCGATCATTCTCGTGGTCGTTGCATCGCACT
ACTTATCGAACTTCATCACCTCGCCATTGTTAAAGCTCACTTGGGCGGCCGAGAAGGTCTCAGCCGGCGATCTTGATGAA
ACGATGATCAATACCGAACGTAAAGACGAGATAGGTCGCCTAGCTGTTAGCTTTGAAAGGATGCAGCGCTCTATCCGTGA
AAAAATGCTGCTGATTAGAAGTCAAAATGATGAGTTAGAAGACAACCTCAAAACGATTCAAAAGCAAAACGAAGAGTTGC
AGCTTGCCAATAAACTGAAAGATGAATTCTTGGCGACGACTTCGCATGAGCTCAGAACACCACTGCATGGTATGGTTGGT
ATCGCAGAGGCATTAATATCTGGTGCGAACGGGCCTATTCCCGCCAACCAGAAGTACCAGTTGGATATCATCATCAATAG
TGGTCAGAGATTGGCGACCTTGGTTGATGACCTGCTCGATTACCACAAAATGCGCTATGGCAGCTTAGATATTAAGAAAT
CAGCCGTTGATTTGTCTGCTGCCACCAGCTTAGTGCTTGAGTTATCTCATCACCTGTTAGGTAACAAACCAATCCGTATT
ATCAACCAAGTTCCAAGTGATTTAGGGTTAGTCTCGTCTGATCCTCAACGACTGGAACAAGTGATGTATAACTTGGTCGG
CAATGCCATCAAGTACACATCCGAAGGTAAGATTGTTATCTCAGCAAGCGTTATCGACGACAACATTCGTGTACAAGTTG
TCGATACCGGCCAAGGTATCCCAGCAGAATACCTAGAACACATCTTTGAACCACTCATTCAAGCAGGACAAGACTCAAGT
AACTATCGCCAAGGTGCAGGGCTTGGGTTGTCCATTAGCCGTCAGCTGATCGAGCTAATGGGTGGCTCGCTGTACGTAAG
TAGCCAGCCTATGCTTGGGACGACCTTCAGCTTCACATTGCCTCTAGCTACCCAGGAAGAGTTGGATAGCTACAATGAAT
CTGGGAGCTATTCACACTTCCAAGTGCCTGATTTGATTGATAACACTCAGCAAGAAAATAGCGTTATTAGCGAAGACCCG
AACGGCCCGTTGTTAGTGATTGCTGATGATGAACCGGTCAACTTGCGCGTGTTAGACAGCTTCTTGAAATTAGAAGGTTA
TCGAGTTCGCACCGCATGCGACGGTCCGGAAACGATTGAACTGATTGAGAAAGAGAAGCCAGAACTGCTTCTACTCGACA
TCATGATGCCGGGTATGAGTGGCTATCAGGTGTGTGAAGCGCTGCGTAAGCAATATGACCATGCGCAATTGCCAATCATC
ATGCTCACTGCACTTAATCAAGCGGAAGACCGTGTTCGTGGCTTTGAAGCTGGTGCCAACGATTACTTATCTAAGCCGTT
TAACAAACAAGAACTGGCTGCTCGAATCACAGCGCACTTATCCGCGAGTAAGGCCGAACAGAGACGCCTTGAGAATGACC
TGCTGCAACTAGAGCTCAAACACCGAGCCATGGTTGAAGCTAACCTACTCGAAACTCAAGGACGCTTGTTAGAACAGTTA
GAATCAGCTCCAGAAGCCATTATCTGTATTCGAGAAGACCAACGCATTCGCTTTGCCAACGAAGCGGCGGCGAAACTGTT
TAGACGCGGACAAGAGCAACTTAAGCGCTCAATGGCCGATGAGATCATTGCACCTAAATACCTCAAGGTGGAACAAGCTC
ACTACTGTGGCGACATCGATATCTATATTGATGATACGCGTCAGCGCATACCAAGTGACATCCTTAAGCTGCCTGAAGGC
TCAGGGCTCGATACCATGTATATCTTCAATGTCGGTGGTGGTGTTAACTCAAACCGTATCAATAACCTTGAAACGGCGGT
TGAAGCGCTTTCAAGTTATGCTTTTGAAGGCGATAAAGACAAACTGCAACAACTGAAAGAGCTCGGCGGTGAGTTCACTC
GCCTTGCTGATAAGGCAACCGGTGAAGGTAAAAACAAACAAGAACTAATGCGTGAAGTGTTGGTGGATGCGATGACCAAT
GCCATCATTTATTGGGAGTCAGTCACAGGTGAAACGAAGTTTGCTTTCGCAGAGAAGAGTGGTTTATGGCGTGTTTACTT
AGACCGAAGCACGCTTCAAACACGAACCCTAGATAAATATCTACGCTTTGAAACCTTACCGAAGACGCCTCGCTGGCGCA
CGGTATTGAGTTCTATTGAGTTCATTCTAGAGCACTGTAAGGAACAGACACCAGAAAGAACTCATATTGAGATGCTAAGG
GATAAACTACAGAAATTACTGACCAGCTAA

Domains

Predicted by InterproScan.

• PAS fold (PAS) (877-922)

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• Response regulator receiver domain (Response_reg) (726-836)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.262	100	0.763