Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   IHV80_RS09445 Genome accession   NZ_CP062500
Coordinates   2142342..2143523 (+) Length   393 a.a.
NCBI ID   WP_192888854.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2137342..2148523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS09425 - 2137986..2138717 (-) 732 WP_192888850.1 SDR family NAD(P)-dependent oxidoreductase -
  IHV80_RS09430 - 2138847..2139605 (+) 759 WP_192888851.1 helix-turn-helix domain-containing protein -
  IHV80_RS09435 - 2139648..2140541 (-) 894 WP_192888852.1 EamA family transporter -
  IHV80_RS09440 - 2140645..2142033 (+) 1389 WP_192888853.1 PLP-dependent aminotransferase family protein -
  IHV80_RS09445 cqsA 2142342..2143523 (+) 1182 WP_192888854.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IHV80_RS09450 - 2143677..2145725 (-) 2049 WP_192888855.1 response regulator -
  IHV80_RS09455 - 2146082..2147851 (-) 1770 WP_192888856.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43823.01 Da        Isoelectric Point: 6.3859

>NTDB_id=490500 IHV80_RS09445 WP_192888854.1 2142342..2143523(+) (cqsA) [Vibrio bathopelagicus strain Sal10]
MSDKTKKKPLPSFIEERLNFYIQDLITQNESQKHLVLGKRPPRNAVVMQSNDYLALSHNKQIQQAHQAAISEHDDNVVMS
AIFLQDEESKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPDTPVYIDFFAHMSLWEGIRAAGAIAHPFMHNNMS
HLRRLLERHGSGVIVIDSVYSTIGTIAPLRDIYEMAQAFDCAVIVDESHSLGTHGENGAGLVQALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSDTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGAEDKRKTLFERAKSLATGLKRIGFNIRSESQ
IVALECGNERNTERVRDFLEQRDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=490500 IHV80_RS09445 WP_192888854.1 2142342..2143523(+) (cqsA) [Vibrio bathopelagicus strain Sal10]
ATGAGTGATAAAACCAAAAAAAAACCATTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGACCTGATTAC
CCAGAATGAAAGCCAGAAACACTTGGTTTTGGGTAAACGTCCACCACGCAACGCTGTTGTCATGCAGAGCAATGATTACT
TAGCACTGTCACATAACAAGCAGATCCAACAAGCTCACCAAGCGGCGATCAGTGAACACGATGACAACGTGGTGATGTCT
GCGATTTTCTTACAAGACGAAGAATCTAAACCTGCGTTTGAAACCGAACTCGCGAACTATGTCGGAATGGAAAGCTGTTT
GCTTTCTCAATCTGGCTGGGCGGCCAATATTGGGTTACTTCAAACTATCTGTCCGCCAGATACGCCAGTGTATATCGACT
TTTTTGCACACATGTCGCTGTGGGAAGGCATTCGCGCGGCTGGTGCAATAGCCCATCCATTTATGCATAACAATATGAGT
CACTTACGCAGGCTGCTTGAACGCCACGGTTCAGGCGTTATTGTGATCGATTCGGTTTATAGCACAATTGGCACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAAGCGTTTGATTGTGCGGTCATCGTTGATGAATCGCATTCACTGGGCACTC
ATGGAGAGAATGGTGCTGGCTTAGTGCAAGCGCTCGGACTCACGAATCAAGTCGACTTCATCACCGTCAGCTTGGCAAAG
ACCTTTGCTTATCGCGCAGGCGCAATCCTCGGGCCCAAACAGCTCTCCGATACCTTGCCGTTTGTCGCATACCCTGCGAT
TTTTAGCTCAACGGTGTTGCCACAAGAAGTGATTCGTTTAGAGAAAACCTTAGAGGTGATTAAAGGTGCCGAAGATAAAC
GAAAGACTTTATTTGAACGCGCTAAATCGCTCGCTACAGGCCTCAAACGGATTGGCTTTAACATCCGTAGTGAATCTCAA
ATCGTTGCGTTAGAGTGCGGCAATGAGAGAAATACAGAGCGAGTGCGCGACTTCCTTGAGCAACGTGATGTGTTCGGTGC
TGTGTTCTGCCGCCCCGCTACGGGCAAGAATAAGAACATCATCCGATTTTCAGTGAATGCCGACATGACACCACGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAAGCGTACAATCACCCGGAGTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.44

98.219

0.545