Detailed information NTG0490499

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: IHV80_RS09365
• Genome accession: NZ_CP062500
• Coordinates: 2127200..2128624 (+)
• Length: 474 a.a.
• NCBI ID: WP_192888840.1
• Uniprot ID: -
• Organism: Vibrio bathopelagicus strain Sal10
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2122200..2133624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHV80_RS09350	-	2124627..2125337 (-)	711	WP_192888837.1	molecular chaperone	-
IHV80_RS09355	-	2125334..2125771 (-)	438	WP_192888838.1	DUF4402 domain-containing protein	-
IHV80_RS09360	-	2125824..2126258 (-)	435	WP_192888839.1	DUF4402 domain-containing protein	-
IHV80_RS09365	sbcB	2127200..2128624 (+)	1425	WP_192888840.1	exodeoxyribonuclease I	Machinery gene
IHV80_RS09370	-	2128649..2129020 (+)	372	WP_192888841.1	CidA/LrgA family protein	-
IHV80_RS09375	-	2129023..2129700 (+)	678	WP_192888842.1	LrgB family protein	-
IHV80_RS09380	cdd	2129990..2130877 (+)	888	WP_192888843.1	cytidine deaminase	-
IHV80_RS09385	purT	2131045..2132220 (+)	1176	WP_192888844.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
IHV80_RS09390	-	2132311..2132964 (-)	654	WP_192888845.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54549.86 Da
• Isoelectric Point: 5.0214

>NTDB_id=490499 IHV80_RS09365 WP_192888840.1 2127200..2128624(+) (sbcB) [Vibrio bathopelagicus strain Sal10]
MSSDNQSTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPGPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGINWPTNDEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWVVPMAWHPTNQNAVIVVDLAKDPSPLLELDSEALKERLYTKRSELAEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQERVYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREYYESRLEDYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=490499 IHV80_RS09365 WP_192888840.1 2127200..2128624(+) (sbcB) [Vibrio bathopelagicus strain Sal10]
ATGAGTTCAGATAATCAGTCGACCTACTTCTTTTTCGATTACGAAACATGGGGCGTTAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAATATTATCGGAGAGCCTTTAGTTATCTACTGCCAGCCTCCTGCTG
ATTATCTACCTGGACCTGAAGCTGCATTAATAACCCGAATTACGCCTCAGAAAGCCATGTCACAAGGCTTACCTGAGCCT
GAGTTTATCGCTAAGATTCATGCCGAGCTTGCTAAGCCGAACACAACGAGCCTTGGATACAACAGTATTCGATTCGATGA
TGAAGTGACTCGATACACTTGTTACCGCAACTTCATTGACCCATATGCGTGGAGCTGGCAGAACGGCAATTCACGTTGGG
ATTTATTGGATGTGATGCGCGCAGTCCATGCACTGCGCCCTGACGGTATTAATTGGCCAACAAACGATGAAGGTTTTCCA
AGTTTCAAACTGGAACACCTATCTGTGGCAAACGGCATAGAACACGAAAACGCGCACGATGCGATGGCTGATGTTATTGC
GACTATCGAACTGGCTAAGAAGTTAAAGGCCGCACAGCCTAAGATGTTTGATTACCTCTACAACATGCGTCATAAGCGCA
AGTTGAACGATTTAGTCGACATCGTAAACATGACGCCTTTAATGCACGTTTCTGGCATGTTTGGTCGTGATTGTAATTAC
ACAAGCTGGGTAGTGCCTATGGCATGGCACCCAACTAACCAAAACGCGGTTATTGTGGTCGATCTCGCTAAAGACCCTAG
TCCGCTACTGGAACTGGATTCAGAAGCGCTGAAAGAAAGGCTTTATACCAAACGTAGTGAGCTTGCCGAAGACGAACTGC
CAGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAACGCCGAA
ACGATCGGTATCGACCGTCAACAATGTTTGAAGAACCTAGCCCTATTACGTGAACATCCAGAGATCCGTGAGAAGCTGAT
CGGTTTGTATTCACAAGAGCGTGTGTACGAGAAAAGCGATGACGTAGACACACACCTTTACGACGGTTTCTTCTCACCAG
CCGACAAAACCGCGATGAACATCATTCGCGAGACTGACCCAAATAATTTGGCAGCACTCGATATCACTTTTGGTGATGAA
CGCATTAAGCCTTTGTTATTCCGTTACCGCGCTCGCCATTTCCCATGGACGCTAGACGAAGCTGAACAACTGAAGTGGGC
TAACCACTGTCGTGAGTATTACGAGAGTCGTTTAGAGGATTACATGTTAAACCTCGAAAACCTCGCGCATGAACACGAAA
GCGACGAGAAAAAAATGGCTATCTTAAAAGCGGTTTATCAGTACGTAGAAAAGTTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.533	99.789	0.764