Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IHV08_RS16585 Genome accession   NZ_CP062497
Coordinates   3175164..3175808 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3170164..3180808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS16550 (IHV08_16550) mrpB 3171356..3171787 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  IHV08_RS16555 (IHV08_16555) mrpC 3171787..3172128 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  IHV08_RS16560 (IHV08_16560) mrpD 3172121..3173602 (+) 1482 WP_003228817.1 Na+/H+ antiporter subunit D -
  IHV08_RS16565 (IHV08_16565) mrpE 3173608..3174084 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  IHV08_RS16570 (IHV08_16570) mrpF 3174084..3174368 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  IHV08_RS16575 (IHV08_16575) mnhG 3174352..3174726 (+) 375 WP_003228812.1 monovalent cation/H(+) antiporter subunit G -
  IHV08_RS16580 (IHV08_16580) yuxO 3174765..3175145 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  IHV08_RS16585 (IHV08_16585) comA 3175164..3175808 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  IHV08_RS16590 (IHV08_16590) comP 3175889..3178186 (-) 2298 WP_033884760.1 histidine kinase Regulator
  IHV08_RS16595 (IHV08_16595) comX 3178194..3178355 (-) 162 WP_003241045.1 competence pheromone ComX -
  IHV08_RS16600 (IHV08_16600) - 3178370..3179230 (-) 861 WP_192857944.1 polyprenyl synthetase family protein -
  IHV08_RS16605 (IHV08_16605) degQ 3179415..3179555 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  IHV08_RS21885 - 3179777..3179839 (+) 63 Protein_3229 hypothetical protein -
  IHV08_RS16610 (IHV08_16610) - 3180018..3180386 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=490471 IHV08_RS16585 WP_003220716.1 3175164..3175808(-) (comA) [Bacillus subtilis strain CV16]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=490471 IHV08_RS16585 WP_003220716.1 3175164..3175808(-) (comA) [Bacillus subtilis strain CV16]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTGCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1