Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KFU78_RS19265 Genome accession   NZ_CP074047
Coordinates   3966584..3967966 (-) Length   460 a.a.
NCBI ID   WP_257187804.1    Uniprot ID   -
Organism   Escherichia coli strain PD7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3961584..3972966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU78_RS19255 (KFU78_19100) ettA 3963357..3965024 (+) 1668 WP_000046749.1 energy-dependent translational throttle protein EttA -
  KFU78_RS24825 - 3965185..3965280 (-) 96 Protein_3787 hypothetical protein -
  KFU78_RS19260 (KFU78_19105) nadR 3965331..3966563 (-) 1233 WP_000093810.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  KFU78_RS19265 (KFU78_19110) radA/sms 3966584..3967966 (-) 1383 WP_257187804.1 DNA repair protein RadA Machinery gene
  KFU78_RS19270 (KFU78_19115) serB 3968015..3968983 (-) 969 WP_001132955.1 phosphoserine phosphatase -
  KFU78_RS19275 (KFU78_19120) ytjB 3969089..3969733 (+) 645 WP_000124615.1 YtjB family periplasmic protein -
  KFU78_RS19280 (KFU78_19125) lplA 3969761..3970777 (+) 1017 WP_000105889.1 lipoate--protein ligase LplA -
  KFU78_RS19285 (KFU78_19130) - 3970809..3970955 (+) 147 Protein_3793 XRE family transcriptional regulator -
  KFU78_RS19290 (KFU78_19135) - 3971050..3972030 (+) 981 WP_222898901.1 IS5-like element ISKpn26 family transposase -
  KFU78_RS19295 (KFU78_19140) - 3972178..3972273 (+) 96 Protein_3795 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49490.01 Da        Isoelectric Point: 6.9933

>NTDB_id=490470 KFU78_RS19265 WP_257187804.1 3966584..3967966(-) (radA/sms) [Escherichia coli strain PD7]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASSTVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKEPEGMQIFGVKKLSDALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=490470 KFU78_RS19265 WP_257187804.1 3966584..3967966(-) (radA/sms) [Escherichia coli strain PD7]
GTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGC
CTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGTCAACGGTGGCGCGTAACGAGCGTCTCAGCGGCT
ATGCCGGTAGCGCCGGGGTGGCAAAAGTCCAGAAACTTTCCGATATCAGCCTTGAAGAGCTGCCGCGTTTTTCCACCGGA
TTCAAAGAGTTCGACCGCGTATTAGGCGGCGGGGTGGTGCCGGGAAGCGCCATTCTGATTGGCGGTAACCCAGGCGCGGG
GAAATCCACGCTGTTGCTGCAAACGCTGTGCAAACTGGCGCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGC
TGCAACAGGTGGCAATGCGTGCTCATCGCCTCGGCCTGCCGACTGACAATCTTAATATGCTGTCGGAAACCAGCATCGAG
CAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTGACTCGATCCAGGTGATGCATATGGCGGATGT
ACAATCATCGCCTGGCAGTGTGGCGCAGGTGCGTGAAACAGCGGCTTATCTGACGCGCTTCGCCAAAACGCGCGGCGTGG
CGATTGTCATGGTGGGGCACGTAACCAAAGATGGCTCGCTGGCTGGCCCGAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTTTTGGATGGCGATGCCGACTCCCGTTTTCGCACCTTACGCAGCCATAAAAACCGCTTCGGCGCGGTGAATGAGCT
GGGCGTCTTCGCGATGACCGAACAGGGGCTGCGTGAAGTCAGCAACCCTTCGGCAATTTTCTTAAGCCGTGGCGATGAAG
TGACCTCTGGTAGTTCAGTGATGGTGGTATGGGAAGGAACGCGTCCGTTGCTGGTGGAGATCCAGGCGCTGGTCGATCAC
TCGATGATGGCGAATCCGCGCCGCGTGGCGGTAGGTCTGGAGCAAAACCGTCTGGCAATCCTGCTGGCTGTCTTGCACCG
TCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACGGAAACCAGTGCCG
ACTTAGCGTTACTGCTGGCGATGGTTTCCAGCCTGCGCGACAGACCGCTGCCGCAGGATCTGGTGGTGTTTGGTGAAGTC
GGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGC
GATTGTTCCGGCGGCTAACGTACCGAAAAAAGAGCCGGAAGGGATGCAGATTTTTGGCGTTAAAAAACTCTCCGACGCGC
TTAGCGTGTTCGACGACTTATAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.608

99.348

0.463
  radA Streptococcus mitis NCTC 12261

43.64

99.13

0.433
  radA Streptococcus pneumoniae Rx1

43.64

99.13

0.433
  radA Streptococcus pneumoniae D39

43.64

99.13

0.433
  radA Streptococcus pneumoniae R6

43.64

99.13

0.433
  radA Streptococcus pneumoniae TIGR4

43.64

99.13

0.433
  radA Streptococcus mitis SK321

43.64

99.13

0.433