Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   IHV08_RS14620 Genome accession   NZ_CP062497
Coordinates   2785298..2786044 (-) Length   248 a.a.
NCBI ID   WP_101172351.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2780298..2791044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS14595 (IHV08_14595) mreC 2780704..2781576 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  IHV08_RS14600 (IHV08_14600) mreB 2781607..2782620 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  IHV08_RS14605 (IHV08_14605) radC 2782712..2783407 (-) 696 WP_014480455.1 DNA repair protein RadC -
  IHV08_RS14610 (IHV08_14610) maf 2783444..2784013 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  IHV08_RS14615 (IHV08_14615) spoIIB 2784166..2785164 (-) 999 WP_181217306.1 stage II sporulation protein SpoIIB -
  IHV08_RS14620 (IHV08_14620) comC 2785298..2786044 (-) 747 WP_101172351.1 A24 family peptidase Machinery gene
  IHV08_RS14625 (IHV08_14625) folC 2786184..2787476 (-) 1293 WP_181217307.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IHV08_RS14630 (IHV08_14630) valS 2787536..2790178 (-) 2643 WP_004398606.1 valine--tRNA ligase -
  IHV08_RS14635 (IHV08_14635) - 2790626..2790817 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=490466 IHV08_RS14620 WP_101172351.1 2785298..2786044(-) (comC) [Bacillus subtilis strain CV16]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGATAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=490466 IHV08_RS14620 WP_101172351.1 2785298..2786044(-) (comC) [Bacillus subtilis strain CV16]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGACAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992