Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | IHV08_RS13555 | Genome accession | NZ_CP062497 |
| Coordinates | 2599372..2599782 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain CV16 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2594738..2621937 | 2599372..2599782 | within | 0 |
Gene organization within MGE regions
Location: 2594738..2621937
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHV08_RS13530 (IHV08_13530) | yqeF | 2594905..2595636 (-) | 732 | WP_043857847.1 | SGNH/GDSL hydrolase family protein | - |
| IHV08_RS13535 (IHV08_13535) | cwlH | 2595888..2596640 (-) | 753 | WP_144483111.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| IHV08_RS13540 (IHV08_13540) | yqeD | 2596827..2597453 (+) | 627 | WP_181217199.1 | TVP38/TMEM64 family protein | - |
| IHV08_RS13545 (IHV08_13545) | gnd | 2597472..2598365 (-) | 894 | WP_181217200.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| IHV08_RS13550 (IHV08_13550) | yqeB | 2598617..2599339 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| IHV08_RS13555 (IHV08_13555) | nucA/comI | 2599372..2599782 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| IHV08_RS13560 (IHV08_13560) | - | 2599978..2600325 (+) | 348 | Protein_2636 | sigma-70 family RNA polymerase sigma factor | - |
| IHV08_RS13565 (IHV08_13565) | spoIVCA | 2600356..2601816 (-) | 1461 | WP_250620417.1 | site-specific DNA recombinase SpoIVCA | - |
| IHV08_RS21840 | - | 2601774..2601952 (-) | 179 | Protein_2638 | hypothetical protein | - |
| IHV08_RS13570 (IHV08_13570) | - | 2602286..2603185 (-) | 900 | WP_133953062.1 | LysR family transcriptional regulator | - |
| IHV08_RS13575 (IHV08_13575) | - | 2603318..2603896 (+) | 579 | WP_181217202.1 | LysE family transporter | - |
| IHV08_RS13580 (IHV08_13580) | - | 2604063..2604701 (+) | 639 | WP_192857894.1 | GntR family transcriptional regulator | - |
| IHV08_RS13585 (IHV08_13585) | - | 2604789..2605445 (+) | 657 | WP_133953056.1 | RraA family protein | - |
| IHV08_RS13590 (IHV08_13590) | - | 2605503..2606153 (+) | 651 | WP_181217204.1 | RraA family protein | - |
| IHV08_RS13595 (IHV08_13595) | - | 2606162..2606833 (+) | 672 | WP_181217205.1 | RraA family protein | - |
| IHV08_RS13600 (IHV08_13600) | - | 2606902..2608155 (+) | 1254 | WP_181217206.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| IHV08_RS13605 (IHV08_13605) | - | 2608396..2609481 (-) | 1086 | WP_181217207.1 | glycosyl hydrolase | - |
| IHV08_RS13610 (IHV08_13610) | rapE | 2610184..2611311 (+) | 1128 | WP_029727091.1 | response regulator aspartate phosphatase RapE | - |
| IHV08_RS13615 (IHV08_13615) | phrE | 2611301..2611435 (+) | 135 | WP_014114495.1 | phosphatase RapE inhibitor PhrE | - |
| IHV08_RS13620 (IHV08_13620) | - | 2611545..2611704 (+) | 160 | Protein_2649 | hypothetical protein | - |
| IHV08_RS13625 (IHV08_13625) | - | 2612073..2613839 (+) | 1767 | WP_181217208.1 | T7SS effector LXG polymorphic toxin | - |
| IHV08_RS13630 (IHV08_13630) | - | 2613853..2614317 (+) | 465 | WP_033884479.1 | SMI1/KNR4 family protein | - |
| IHV08_RS13635 (IHV08_13635) | - | 2614523..2615245 (-) | 723 | WP_181217209.1 | NPP1 family protein | - |
| IHV08_RS13640 (IHV08_13640) | cwlA | 2615439..2616259 (-) | 821 | Protein_2653 | N-acetylmuramoyl-L-alanine amidase | - |
| IHV08_RS13645 (IHV08_13645) | - | 2616304..2616444 (-) | 141 | Protein_2654 | phage holin family protein | - |
| IHV08_RS13650 (IHV08_13650) | - | 2616471..2616656 (-) | 186 | Protein_2655 | phage terminase large subunit | - |
| IHV08_RS13655 (IHV08_13655) | terS | 2616653..2617420 (-) | 768 | WP_181217210.1 | phage terminase small subunit | - |
| IHV08_RS13660 (IHV08_13660) | - | 2617603..2617689 (+) | 87 | WP_073991391.1 | YjcZ family sporulation protein | - |
| IHV08_RS13665 (IHV08_13665) | - | 2617730..2617822 (+) | 93 | WP_029318114.1 | YjcZ family sporulation protein | - |
| IHV08_RS13670 (IHV08_13670) | cotD | 2618008..2618223 (-) | 216 | WP_076458314.1 | spore coat protein CotD | - |
| IHV08_RS13675 (IHV08_13675) | yqaQ | 2618781..2619190 (-) | 410 | Protein_2660 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| IHV08_RS13680 (IHV08_13680) | - | 2619488..2619754 (+) | 267 | WP_029318115.1 | hypothetical protein | - |
| IHV08_RS21845 | - | 2619859..2620042 (-) | 184 | Protein_2662 | hypothetical protein | - |
| IHV08_RS13685 (IHV08_13685) | - | 2620114..2620320 (-) | 207 | Protein_2663 | XtrA/YqaO family protein | - |
| IHV08_RS13690 (IHV08_13690) | - | 2620404..2620823 (-) | 420 | Protein_2664 | RusA family crossover junction endodeoxyribonuclease | - |
| IHV08_RS13695 (IHV08_13695) | - | 2620919..2621068 (-) | 150 | WP_134818976.1 | hypothetical protein | - |
| IHV08_RS13700 (IHV08_13700) | - | 2621074..2621346 (-) | 273 | Protein_2666 | ATP-binding protein | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=490462 IHV08_RS13555 WP_009967785.1 2599372..2599782(-) (nucA/comI) [Bacillus subtilis strain CV16]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=490462 IHV08_RS13555 WP_009967785.1 2599372..2599782(-) (nucA/comI) [Bacillus subtilis strain CV16]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCAGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTACCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCAGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTACCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |