Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IHV08_RS13305 Genome accession   NZ_CP062497
Coordinates   2555929..2556696 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain CV16     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2550929..2561696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS13285 (IHV08_13285) ppsR 2551104..2551916 (-) 813 WP_192857891.1 pyruvate, water dikinase regulatory protein -
  IHV08_RS13290 (IHV08_13290) ccpN 2551942..2552580 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  IHV08_RS13295 (IHV08_13295) glyS 2552713..2554752 (-) 2040 WP_192857892.1 glycine--tRNA ligase subunit beta -
  IHV08_RS13300 (IHV08_13300) glyQ 2554745..2555632 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  IHV08_RS13305 (IHV08_13305) recO 2555929..2556696 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  IHV08_RS13310 (IHV08_13310) yqzL 2556733..2556876 (-) 144 WP_003230053.1 YqzL family protein -
  IHV08_RS13315 (IHV08_13315) era 2557024..2557929 (-) 906 WP_015251686.1 GTPase Era -
  IHV08_RS13320 (IHV08_13320) - 2557910..2558320 (-) 411 WP_032722130.1 cytidine deaminase -
  IHV08_RS13325 (IHV08_13325) unpK 2558439..2558810 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  IHV08_RS13330 (IHV08_13330) ybeY 2558791..2559264 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  IHV08_RS13335 (IHV08_13335) pgpH 2559265..2561400 (-) 2136 WP_015251683.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=490458 IHV08_RS13305 WP_014477369.1 2555929..2556696(-) (recO) [Bacillus subtilis strain CV16]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=490458 IHV08_RS13305 WP_014477369.1 2555929..2556696(-) (recO) [Bacillus subtilis strain CV16]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996