Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | IHV08_RS13030 | Genome accession | NZ_CP062497 |
| Coordinates | 2505994..2507031 (-) | Length | 345 a.a. |
| NCBI ID | WP_181217183.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain CV16 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2500994..2512031
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHV08_RS12980 (IHV08_12980) | tasA | 2501092..2501877 (-) | 786 | WP_192857888.1 | biofilm matrix protein TasA | - |
| IHV08_RS12985 (IHV08_12985) | sipW | 2501941..2502513 (-) | 573 | WP_192858455.1 | signal peptidase I SipW | - |
| IHV08_RS12990 (IHV08_12990) | tapA | 2502497..2503258 (-) | 762 | WP_181217179.1 | amyloid fiber anchoring/assembly protein TapA | - |
| IHV08_RS12995 (IHV08_12995) | yqzG | 2503530..2503856 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| IHV08_RS13000 (IHV08_13000) | spoIITA | 2503898..2504077 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| IHV08_RS13005 (IHV08_13005) | comGG | 2504148..2504522 (-) | 375 | WP_015251714.1 | ComG operon protein ComGG | Machinery gene |
| IHV08_RS13010 (IHV08_13010) | comGF | 2504523..2504906 (-) | 384 | WP_015251713.1 | ComG operon protein ComGF | Machinery gene |
| IHV08_RS13015 (IHV08_13015) | comGE | 2504932..2505279 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| IHV08_RS13020 (IHV08_13020) | comGD | 2505263..2505694 (-) | 432 | WP_181217182.1 | comG operon protein ComGD | Machinery gene |
| IHV08_RS13025 (IHV08_13025) | comGC | 2505684..2505980 (-) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
| IHV08_RS13030 (IHV08_13030) | comGB | 2505994..2507031 (-) | 1038 | WP_181217183.1 | comG operon protein ComGB | Machinery gene |
| IHV08_RS13035 (IHV08_13035) | comGA | 2507018..2508088 (-) | 1071 | WP_181217184.1 | competence protein ComGA | Machinery gene |
| IHV08_RS13040 (IHV08_13040) | corA | 2508500..2509453 (-) | 954 | WP_181217185.1 | magnesium transporter CorA | - |
| IHV08_RS13045 (IHV08_13045) | yqhB | 2509596..2510924 (+) | 1329 | WP_181217186.1 | hemolysin family protein | - |
| IHV08_RS13050 (IHV08_13050) | rsbRD | 2510977..2511813 (-) | 837 | WP_173614187.1 | RsbT co-antagonist protein RsbRD | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39730.17 Da Isoelectric Point: 9.6257
>NTDB_id=490456 IHV08_RS13030 WP_181217183.1 2505994..2507031(-) (comGB) [Bacillus subtilis strain CV16]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDTVTCLREGTPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQLSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDTVTCLREGTPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQLSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=490456 IHV08_RS13030 WP_181217183.1 2505994..2507031(-) (comGB) [Bacillus subtilis strain CV16]
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCGAGGTTATTAAAGCGGCTCGGTGAAATGACTGCGGGGGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATACGGTCA
CTTGTTTGAGGGAAGGGACTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTATCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCGAGGTTATTAAAGCGGCTCGGTGAAATGACTGCGGGGGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATACGGTCA
CTTGTTTGAGGGAAGGGACTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTATCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
98.762 |
93.623 |
0.925 |