Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IHV08_RS12780 Genome accession   NZ_CP062497
Coordinates   2466032..2466835 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2461032..2471835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS12755 (IHV08_12755) glpQB 2462170..2462901 (-) 732 WP_192857886.1 glycerophosphodiester phosphodiesterase -
  IHV08_RS12760 (IHV08_12760) yqiI 2462980..2463600 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  IHV08_RS12765 (IHV08_12765) - 2463620..2463916 (-) 297 WP_029317929.1 hypothetical protein -
  IHV08_RS12770 (IHV08_12770) - 2464224..2464376 (+) 153 WP_014480226.1 hypothetical protein -
  IHV08_RS12775 (IHV08_12775) yqiG 2464449..2465567 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  IHV08_RS12780 (IHV08_12780) spo0A 2466032..2466835 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  IHV08_RS12785 (IHV08_12785) spoIVB 2467111..2468391 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  IHV08_RS12790 (IHV08_12790) recN 2468566..2470296 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  IHV08_RS12795 (IHV08_12795) argR 2470333..2470782 (-) 450 WP_029317927.1 arginine repressor ArgR -
  IHV08_RS12800 (IHV08_12800) yqxC 2470880..2471725 (-) 846 WP_014477301.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=490447 IHV08_RS12780 WP_003226427.1 2466032..2466835(-) (spo0A) [Bacillus subtilis strain CV16]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=490447 IHV08_RS12780 WP_003226427.1 2466032..2466835(-) (spo0A) [Bacillus subtilis strain CV16]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1