Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IHV08_RS11785 Genome accession   NZ_CP062497
Coordinates   2288768..2289388 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2283768..2294388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS11745 (IHV08_11745) ptsA 2284900..2285406 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  IHV08_RS11750 (IHV08_11750) ypqA 2285544..2285963 (+) 420 WP_192857870.1 Hsp20/alpha crystallin family protein -
  IHV08_RS11755 (IHV08_11755) sppG 2285984..2286361 (-) 378 WP_004398696.1 YppG family protein -
  IHV08_RS11760 (IHV08_11760) yppF 2286549..2286737 (+) 189 WP_003230690.1 YppF family protein -
  IHV08_RS11765 (IHV08_11765) yppE 2286776..2287147 (-) 372 WP_003246080.1 YppE family protein -
  IHV08_RS11770 (IHV08_11770) yppD 2287193..2287438 (-) 246 WP_015251831.1 YppD family protein -
  IHV08_RS11775 (IHV08_11775) sspM 2287636..2287740 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  IHV08_RS11780 (IHV08_11780) yppC 2287765..2288727 (-) 963 WP_128993051.1 DUF2515 domain-containing protein -
  IHV08_RS11785 (IHV08_11785) recU 2288768..2289388 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  IHV08_RS11790 (IHV08_11790) ponA 2289410..2292154 (+) 2745 WP_042976357.1 PBP1A family penicillin-binding protein -
  IHV08_RS11795 (IHV08_11795) ypoC 2292230..2292724 (-) 495 WP_029726783.1 YpoC family protein -
  IHV08_RS11800 (IHV08_11800) nth 2292721..2293380 (-) 660 WP_009967580.1 endonuclease III -
  IHV08_RS11805 (IHV08_11805) dnaD 2293399..2294097 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=490446 IHV08_RS11785 WP_004399067.1 2288768..2289388(+) (recU) [Bacillus subtilis strain CV16]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=490446 IHV08_RS11785 WP_004399067.1 2288768..2289388(+) (recU) [Bacillus subtilis strain CV16]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1