Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IHV08_RS07975 Genome accession   NZ_CP062497
Coordinates   1509479..1509757 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain CV16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504479..1514757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS07955 (IHV08_07955) panEB 1505667..1506578 (+) 912 WP_021479370.1 ketopantoate reductase family protein -
  IHV08_RS07960 (IHV08_07960) ampS 1506612..1507844 (-) 1233 WP_003232341.1 aminopeptidase -
  IHV08_RS07965 (IHV08_07965) ykpC 1507953..1508087 (-) 135 WP_003238865.1 protein YkpC -
  IHV08_RS07970 (IHV08_07970) mreBH 1508188..1509195 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  IHV08_RS07975 (IHV08_07975) abrB 1509479..1509757 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  IHV08_RS07980 (IHV08_07980) kinC 1509947..1511233 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  IHV08_RS07985 (IHV08_07985) ykqA 1511249..1512076 (+) 828 WP_181217041.1 gamma-glutamylcyclotransferase -
  IHV08_RS07990 (IHV08_07990) ktrC 1512139..1512804 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  IHV08_RS07995 (IHV08_07995) ade 1512960..1514693 (+) 1734 WP_181217042.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=490440 IHV08_RS07975 WP_003244728.1 1509479..1509757(+) (abrB) [Bacillus subtilis strain CV16]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=490440 IHV08_RS07975 WP_003244728.1 1509479..1509757(+) (abrB) [Bacillus subtilis strain CV16]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576