Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IHV08_RS07855 Genome accession   NZ_CP062497
Coordinates   1485401..1485976 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1480401..1490976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS07825 (IHV08_07825) dapD 1480587..1481297 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  IHV08_RS07830 (IHV08_07830) dapI 1481367..1482491 (+) 1125 WP_038428899.1 N-acetyldiaminopimelate deacetylase -
  IHV08_RS07835 (IHV08_07835) ykuS 1482553..1482798 (+) 246 WP_181217037.1 YkuS family protein -
  IHV08_RS07840 (IHV08_07840) mscT 1482835..1483638 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  IHV08_RS07845 (IHV08_07845) ahpA 1483875..1484417 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  IHV08_RS07850 (IHV08_07850) ykuV 1484489..1484935 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  IHV08_RS07855 (IHV08_07855) rok 1485401..1485976 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  IHV08_RS07860 (IHV08_07860) cse15 1486017..1486982 (-) 966 WP_003245018.1 spore protein Cse15 -
  IHV08_RS07865 (IHV08_07865) mobA 1487119..1487718 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  IHV08_RS07870 (IHV08_07870) moeB 1487769..1488788 (+) 1020 WP_032721477.1 molybdopterin-synthase adenylyltransferase MoeB -
  IHV08_RS07875 (IHV08_07875) glp 1488806..1490098 (+) 1293 WP_167408114.1 gephyrin-like molybdotransferase Glp -
  IHV08_RS07880 (IHV08_07880) mobB 1490059..1490580 (+) 522 WP_167408115.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=490439 IHV08_RS07855 WP_003232378.1 1485401..1485976(+) (rok) [Bacillus subtilis strain CV16]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=490439 IHV08_RS07855 WP_003232378.1 1485401..1485976(+) (rok) [Bacillus subtilis strain CV16]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1