Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IHV08_RS05820 Genome accession   NZ_CP062497
Coordinates   1110445..1111023 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105445..1116023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS05800 (IHV08_05800) hemAT 1105956..1107254 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  IHV08_RS05805 (IHV08_05805) comW 1107393..1108922 (-) 1530 WP_131227285.1 FAD-dependent oxidoreductase -
  IHV08_RS05810 (IHV08_05810) yhxC 1109034..1109891 (+) 858 WP_192858349.1 SDR family oxidoreductase -
  IHV08_RS05815 (IHV08_05815) yhzC 1109919..1110152 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  IHV08_RS05820 (IHV08_05820) comK 1110445..1111023 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  IHV08_RS05825 (IHV08_05825) yhxD 1111068..1111967 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  IHV08_RS05830 (IHV08_05830) yhjA 1112171..1112449 (+) 279 WP_181216947.1 excalibur calcium-binding domain-containing protein -
  IHV08_RS05835 (IHV08_05835) yhjB 1112493..1113962 (-) 1470 WP_181216948.1 sodium:solute symporter -
  IHV08_RS05840 (IHV08_05840) yhjC 1113959..1114159 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  IHV08_RS05845 (IHV08_05845) - 1114358..1114729 (-) 372 WP_014476361.1 hypothetical protein -
  IHV08_RS05850 (IHV08_05850) yhjE 1114881..1115504 (+) 624 WP_181216949.1 TVP38/TMEM64 family protein -
  IHV08_RS05855 (IHV08_05855) lepB 1115506..1116012 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=490426 IHV08_RS05820 WP_029317573.1 1110445..1111023(+) (comK) [Bacillus subtilis strain CV16]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=490426 IHV08_RS05820 WP_029317573.1 1110445..1111023(+) (comK) [Bacillus subtilis strain CV16]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995