Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SESEC_RS02145 Genome accession   NC_017582
Coordinates   437240..437965 (+) Length   241 a.a.
NCBI ID   WP_012678429.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus ATCC 35246     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 432240..442965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SESEC_RS02115 (SeseC_00504) tsaE 432658..433101 (+) 444 WP_014622376.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SESEC_RS02120 (SeseC_00505) - 433094..433621 (+) 528 WP_014622377.1 GNAT family N-acetyltransferase -
  SESEC_RS02125 (SeseC_00506) brpA 433622..434884 (+) 1263 WP_014622378.1 biofilm formation/cell division transcriptional regulator BrpA -
  SESEC_RS02130 (SeseC_00509) - 435048..435350 (-) 303 WP_014622379.1 hypothetical protein -
  SESEC_RS02135 (SeseC_00510) - 435347..435766 (-) 420 WP_012515079.1 HIT family protein -
  SESEC_RS02140 (SeseC_00511) - 436239..436703 (-) 465 WP_014622380.1 hypothetical protein -
  SESEC_RS02145 (SeseC_00514) pptA 437240..437965 (+) 726 WP_012678429.1 ABC transporter ATP-binding protein Regulator
  SESEC_RS02150 (SeseC_00515) - 437969..439003 (+) 1035 WP_014622382.1 ABC transporter permease -
  SESEC_RS02155 (SeseC_00516) ccrZ 439066..439857 (+) 792 WP_012515084.1 cell cycle regulator CcrZ -
  SESEC_RS02160 (SeseC_00517) trmB 439857..440492 (+) 636 WP_012678427.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SESEC_RS02175 (SeseC_00520) - 441108..441623 (-) 516 WP_014622383.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26506.80 Da        Isoelectric Point: 4.8615

>NTDB_id=49041 SESEC_RS02145 WP_012678429.1 437240..437965(+) (pptA) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=49041 SESEC_RS02145 WP_012678429.1 437240..437965(+) (pptA) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTCGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCTT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCTTATATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTATGATATTGATGTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGTTTGACGGATAAGCTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGTTTTGTGATATTGCATCAGGGACAGGTGCGTGCACAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACCTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73

Multiple sequence alignment