Detailed information NTG0049038

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SESEC_RS01480
• Genome accession: NC_017582
• Coordinates: 292916..293851 (+)
• Length: 311 a.a.
• NCBI ID: WP_012514940.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus ATCC 35246
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 287916..298851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SESEC_RS01460 (SeseC_00333)	-	288078..289736 (+)	1659	WP_012678547.1	peptide ABC transporter substrate-binding protein	-
SESEC_RS01465 (SeseC_00335)	-	289903..290817 (+)	915	WP_012514937.1	ABC transporter permease	-
SESEC_RS01470 (SeseC_00336)	-	290827..291858 (+)	1032	WP_014622277.1	ABC transporter permease	-
SESEC_RS01475 (SeseC_00337)	oppD	291870..292916 (+)	1047	WP_014622278.1	ABC transporter ATP-binding protein	Regulator
SESEC_RS01480 (SeseC_00338)	amiF	292916..293851 (+)	936	WP_012514940.1	ABC transporter ATP-binding protein	Regulator
SESEC_RS01485 (SeseC_00340)	rnjA	294481..296163 (-)	1683	WP_012514941.1	ribonuclease J1	-
SESEC_RS01490 (SeseC_00341)	-	296165..296395 (-)	231	WP_014622279.1	DNA-dependent RNA polymerase subunit epsilon	-
SESEC_RS01495 (SeseC_00342)	tsaB	296681..297379 (+)	699	WP_014622280.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SESEC_RS01500 (SeseC_00344)	rimI	297382..297807 (+)	426	WP_014622281.1	ribosomal protein S18-alanine N-acetyltransferase	-
SESEC_RS01505 (SeseC_00346)	tsaD	297797..298813 (+)	1017	WP_038674573.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35067.17 Da
• Isoelectric Point: 8.3565

>NTDB_id=49038 SESEC_RS01480 WP_012514940.1 292916..293851(+) (amiF) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERRRIAEVYDPSQELDGQERQMYEITPGHFVLATQAEADQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=49038 SESEC_RS01480 WP_012514940.1 292916..293851(+) (amiF) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGACCATTTGACGCGCTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGCATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAG
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGTATGAAATCACTCCTGGGCATT
TTGTTTTAGCGACGCAGGCCGAAGCCGATCAGTATCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.922	98.392	0.531
amiF	Streptococcus thermophilus LMG 18311	53.595	98.392	0.527
amiF	Streptococcus salivarius strain HSISS4	53.268	98.392	0.524