Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ILQ00_RS09350 Genome accession   NZ_CP062473
Coordinates   2031983..2033356 (+) Length   457 a.a.
NCBI ID   WP_057910304.1    Uniprot ID   A0A1X1FDC4
Organism   Lentilactobacillus parabuchneri strain KEM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2026983..2038356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILQ00_RS09325 (ILQ00_09325) - 2027122..2028066 (+) 945 WP_057910309.1 AEC family transporter -
  ILQ00_RS09330 (ILQ00_09330) - 2028198..2028869 (+) 672 WP_057910308.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ILQ00_RS09335 (ILQ00_09335) - 2028956..2030290 (-) 1335 WP_057910307.1 aminopeptidase C -
  ILQ00_RS09340 (ILQ00_09340) rpiA 2030522..2031205 (-) 684 WP_057910306.1 ribose-5-phosphate isomerase RpiA -
  ILQ00_RS09345 (ILQ00_09345) - 2031351..2031890 (+) 540 WP_057910305.1 dUTP diphosphatase -
  ILQ00_RS09350 (ILQ00_09350) radA 2031983..2033356 (+) 1374 WP_057910304.1 DNA repair protein RadA Machinery gene
  ILQ00_RS09355 (ILQ00_09355) - 2033386..2034558 (+) 1173 WP_057910303.1 PIN/TRAM domain-containing protein -
  ILQ00_RS09360 (ILQ00_09360) gltX 2034647..2036140 (+) 1494 WP_057910302.1 glutamate--tRNA ligase -
  ILQ00_RS09365 (ILQ00_09365) cysS 2036280..2037686 (+) 1407 WP_057910301.1 cysteine--tRNA ligase -
  ILQ00_RS09370 (ILQ00_09370) - 2037695..2038105 (+) 411 WP_057910338.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49665.07 Da        Isoelectric Point: 7.7051

>NTDB_id=490370 ILQ00_RS09350 WP_057910304.1 2031983..2033356(+) (radA) [Lentilactobacillus parabuchneri strain KEM]
MAKVKTQFVCQNCGYISPRYLGRCPNCNQWNTLVEETIAPKNSTMATQSLRRNGIHDNKPEAINKVEFHQDVRFKTEMEE
LNRVLGGGVVPGSLILIGGDPGIGKSTLMLQVSGQLSKSGTILYVSGEESASQIKMRADRLGVNGDNLFVYPETDMDVIK
DTINDMKPDAVIIDSVQTMQIPELQSATGSVAQIREVTADLMNIAKGQGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHSYRILRTVKNRFGSTNELGVFEMRTDGLREVKNPSEIFLEERLKDATGSAIVVSMEGTRPILVEIQALVTASVF
GNAQRTATGLDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLDEPAIDLAVAVSIASSYKNRGTSPTECYVGELGLT
GEIRRVTRIEQRVAEAQKLGFRRVLVPANNLQGWNPPKGIDVVGVSTLSQALKLALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=490370 ILQ00_RS09350 WP_057910304.1 2031983..2033356(+) (radA) [Lentilactobacillus parabuchneri strain KEM]
TTGGCAAAAGTTAAAACACAATTTGTATGTCAAAACTGCGGCTACATTTCCCCAAGGTATTTGGGCCGCTGCCCGAATTG
CAACCAGTGGAATACGTTAGTCGAAGAGACAATTGCACCGAAGAACAGTACCATGGCAACTCAGAGTCTTAGACGAAACG
GAATCCATGACAACAAGCCCGAGGCGATTAACAAAGTTGAATTTCACCAAGATGTCCGTTTTAAGACGGAAATGGAAGAA
CTCAACCGCGTGCTCGGCGGCGGTGTGGTTCCCGGCTCGCTGATTTTAATCGGCGGAGATCCCGGAATTGGTAAATCGAC
TTTGATGCTTCAAGTATCCGGTCAGCTCAGCAAATCCGGCACAATTCTTTATGTATCAGGAGAAGAGAGCGCCAGCCAAA
TTAAGATGCGGGCTGACCGTCTCGGGGTTAACGGTGACAATTTGTTTGTTTATCCTGAAACCGATATGGACGTCATCAAA
GACACAATCAACGATATGAAGCCTGATGCGGTGATCATCGATTCGGTTCAAACCATGCAGATTCCAGAATTACAATCGGC
CACAGGCTCGGTTGCCCAGATTCGGGAAGTGACCGCCGACTTGATGAATATTGCCAAGGGACAGGGGATTACGGTATTCG
TTGTTGGCCATGTAACCAAGGGCGGTGCAATTGCCGGTCCCAAAATTTTGGAACATATGGTTGATACGGTCCTTTACTTT
GAGGGCGACCTTCACCACTCGTACCGGATTTTGCGAACGGTAAAAAACCGGTTTGGCTCAACGAACGAACTTGGGGTTTT
TGAAATGCGGACTGACGGTTTGCGGGAAGTCAAGAATCCTTCGGAGATTTTTCTGGAAGAACGGCTGAAGGATGCAACCG
GATCAGCAATCGTGGTTTCCATGGAGGGAACCCGGCCAATCCTCGTTGAAATTCAAGCCCTGGTCACGGCATCTGTATTT
GGAAATGCCCAACGAACGGCAACCGGCCTCGACCGCAACCGTGTTTCCTTAATTATGGCGGTTCTTGAAAAACGGGCCGG
CTTAATGCTGCAAAACCAGGACGCCTATTTGAAGGCAGCAGGTGGTGTCAAACTTGATGAGCCGGCAATTGATTTGGCAG
TTGCCGTCAGCATTGCGTCATCATACAAGAACCGGGGGACCAGCCCGACTGAGTGTTATGTTGGCGAACTGGGGCTAACT
GGCGAAATTCGGCGAGTAACACGAATTGAGCAGCGGGTTGCCGAAGCCCAGAAGCTTGGGTTTAGACGTGTGTTGGTTCC
CGCAAATAATCTTCAGGGATGGAACCCGCCCAAGGGCATCGACGTGGTTGGTGTTTCAACGTTGTCCCAAGCCTTGAAGC
TTGCACTGGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1FDC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

65.055

99.562

0.648
  radA Streptococcus mitis SK321

64.835

99.562

0.646
  radA Streptococcus pneumoniae Rx1

64.835

99.562

0.646
  radA Streptococcus pneumoniae TIGR4

64.835

99.562

0.646
  radA Streptococcus pneumoniae D39

64.835

99.562

0.646
  radA Streptococcus pneumoniae R6

64.835

99.562

0.646
  radA Bacillus subtilis subsp. subtilis str. 168

62.256

100

0.628