Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ILQ00_RS01190 Genome accession   NZ_CP062473
Coordinates   222171..223982 (-) Length   603 a.a.
NCBI ID   WP_057910843.1    Uniprot ID   A0A0R1Z387
Organism   Lentilactobacillus parabuchneri strain KEM     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 217171..228982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILQ00_RS01160 (ILQ00_01160) - 217406..217918 (-) 513 WP_057910849.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  ILQ00_RS01165 (ILQ00_01165) - 217936..218784 (-) 849 WP_057910848.1 methyltransferase domain-containing protein -
  ILQ00_RS01170 (ILQ00_01170) - 218905..219798 (-) 894 WP_057910847.1 RluA family pseudouridine synthase -
  ILQ00_RS01175 (ILQ00_01175) - 219791..220603 (-) 813 WP_057910846.1 NAD kinase -
  ILQ00_RS01180 (ILQ00_01180) - 220581..221234 (-) 654 WP_057910845.1 GTP pyrophosphokinase family protein -
  ILQ00_RS01185 (ILQ00_01185) - 221450..222076 (+) 627 WP_057910844.1 DsbA family protein -
  ILQ00_RS01190 (ILQ00_01190) pepF 222171..223982 (-) 1812 WP_057910843.1 oligoendopeptidase F Regulator
  ILQ00_RS01195 (ILQ00_01195) - 224017..225159 (-) 1143 WP_057910842.1 competence protein CoiA -
  ILQ00_RS01200 (ILQ00_01200) - 225316..226848 (+) 1533 WP_192851729.1 gamma-glutamylcysteine synthetase -
  ILQ00_RS01205 (ILQ00_01205) - 226935..228254 (-) 1320 WP_057910840.1 cell wall metabolism sensor histidine kinase WalK -
  ILQ00_RS01210 (ILQ00_01210) - 228241..228942 (-) 702 WP_057910839.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68974.00 Da        Isoelectric Point: 4.8250

>NTDB_id=490356 ILQ00_RS01190 WP_057910843.1 222171..223982(-) (pepF) [Lentilactobacillus parabuchneri strain KEM]
MAKTQELPLRNEVPEALTWDLTTVYASDEAFESDFSDVKAGAEKFAKLSGTIANNAAALLKATDDLMALSRKLEKVYVYA
QLKNDQDTSVDRYQAMYSRSEALAAQFGAATSWFEPELLKISDSKMQEFYQAEPKLTAYQRFFDQTFERRQHILENNVEA
VLAGAGDIFSSGEKTFGILDNTDLSFPSVTDENGNQVKLSQGVYSILLESTNPAVRKEAFQKLYQVYRQFQHTLAATLTT
NVKNHNFKANVRHYNSALEAALSENEVPTAVYDNLIQGVNRHLDLLHRYVALRKRILGLDELHMYDMYTSLVGKKSPKYT
FEQSKAIALEALQVMGPDYVKHVHEAFDGRWIDVVENQFKRSGGYSSGTYDTNPFILLNWKDNLDNLYTLIHETGHSMHS
YYSHHNQPYQYGDYSIFVAEIASTTNENILTDYLLNKFKDDDEMKKFILNYYLDGFKGTVFRQTQFAEFEQFIHEQDAKG
QPLTASFMDQAYRDLNAKYYGDAVISDDEISLEWARIPHFYYNFYVYQYATGFAAASTLADGIVNGGQENVDRYLTYLKS
GSSDTPTNVMKKAGVDMTQPDYLEKAFIIFEERLNEFEALYEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=490356 ILQ00_RS01190 WP_057910843.1 222171..223982(-) (pepF) [Lentilactobacillus parabuchneri strain KEM]
ATGGCTAAAACACAAGAATTACCATTGAGAAATGAGGTTCCGGAAGCCTTGACCTGGGACCTGACAACAGTCTATGCGAG
CGATGAAGCGTTTGAAAGTGACTTTTCCGATGTCAAAGCCGGGGCTGAAAAGTTTGCCAAGCTATCCGGCACGATTGCAA
ACAACGCAGCGGCCTTACTGAAAGCCACTGACGATTTGATGGCACTCAGTCGTAAGCTGGAAAAAGTTTATGTCTACGCC
CAACTAAAGAATGATCAAGACACCAGTGTTGATCGATATCAGGCCATGTATTCGCGTTCGGAGGCTTTGGCCGCTCAATT
TGGCGCGGCGACCTCGTGGTTTGAGCCTGAACTACTCAAAATTTCGGATTCCAAGATGCAGGAATTTTATCAAGCCGAAC
CCAAATTAACTGCTTATCAGCGTTTCTTCGACCAGACGTTTGAGCGGCGACAACACATTTTGGAAAACAACGTTGAAGCC
GTCCTGGCCGGTGCCGGAGATATTTTCTCGTCTGGAGAAAAAACCTTTGGGATTCTTGACAACACTGACTTGTCATTTCC
ATCCGTGACCGACGAAAACGGCAATCAGGTCAAATTATCTCAAGGCGTTTACAGCATTTTGCTTGAGTCAACGAATCCGG
CGGTTCGAAAAGAAGCCTTTCAAAAATTGTATCAAGTATACCGCCAGTTTCAACACACCCTGGCAGCTACTTTGACCACC
AACGTCAAGAATCACAATTTTAAGGCCAACGTTCGTCATTATAATAGCGCGTTGGAGGCGGCTTTGTCGGAAAACGAAGT
GCCAACGGCTGTTTATGACAACTTAATTCAGGGTGTTAACCGTCATTTGGACCTTTTGCATCGATACGTGGCCTTACGAA
AGCGAATCTTAGGGCTTGATGAGCTGCACATGTATGATATGTATACGTCACTGGTCGGCAAAAAGTCGCCCAAATACACC
TTTGAACAGTCCAAGGCAATCGCTTTGGAGGCTTTGCAGGTGATGGGGCCCGATTATGTTAAACACGTTCACGAGGCCTT
TGACGGCCGCTGGATTGATGTCGTCGAAAACCAGTTTAAACGAAGTGGCGGCTATTCATCCGGAACGTACGATACTAATC
CCTTTATCTTACTGAATTGGAAGGATAATCTCGATAACTTGTACACCTTGATTCATGAAACCGGGCACAGTATGCACAGT
TATTATTCACACCACAATCAGCCGTATCAATACGGAGATTATTCAATCTTTGTGGCAGAGATTGCGTCGACAACCAATGA
AAATATTTTGACTGATTATCTCTTGAACAAATTTAAAGACGATGATGAGATGAAGAAGTTCATTTTGAATTATTACCTTG
ACGGTTTTAAGGGCACCGTTTTCCGTCAGACACAATTTGCAGAATTCGAACAGTTTATTCATGAGCAAGATGCCAAAGGA
CAGCCGTTAACGGCAAGTTTCATGGATCAGGCTTACCGTGATTTAAACGCCAAGTACTATGGTGACGCGGTTATTTCTGA
TGACGAGATCAGCTTGGAATGGGCACGAATCCCGCATTTTTACTATAACTTTTACGTCTATCAGTACGCGACCGGGTTTG
CGGCAGCGTCAACGTTGGCCGATGGGATTGTGAATGGCGGTCAGGAAAATGTTGACCGTTATCTAACTTACTTGAAGTCC
GGAAGCTCCGACACGCCAACTAACGTGATGAAAAAAGCCGGGGTTGACATGACACAACCTGATTATCTTGAAAAAGCGTT
TATCATTTTTGAAGAACGCTTGAATGAGTTTGAAGCACTATACGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1Z387

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.04

98.507

0.532