Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KFU67_RS24035 Genome accession   NZ_CP074031
Coordinates   4946601..4947593 (-) Length   330 a.a.
NCBI ID   WP_000224500.1    Uniprot ID   -
Organism   Escherichia coli strain PK12     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4941601..4952593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU67_RS24025 (KFU67_23830) yieP 4944493..4945185 (+) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -
  KFU67_RS24030 (KFU67_23835) mdtD 4945208..4946635 (+) 1428 WP_061092921.1 multidrug transporter subunit MdtD -
  KFU67_RS24035 (KFU67_23840) cytR 4946601..4947593 (-) 993 WP_000224500.1 ribose operon transcriptional repressor RbsR Regulator
  KFU67_RS24040 (KFU67_23845) rbsK 4947597..4948526 (-) 930 WP_001361791.1 ribokinase -
  KFU67_RS24045 (KFU67_23850) rbsB 4948652..4949542 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  KFU67_RS24050 (KFU67_23855) rbsC 4949567..4950532 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  KFU67_RS24055 (KFU67_23860) rbsA 4950537..4952042 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  KFU67_RS24060 (KFU67_23865) rbsD 4952050..4952469 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36626.88 Da        Isoelectric Point: 5.2141

>NTDB_id=490251 KFU67_RS24035 WP_000224500.1 4946601..4947593(-) (cytR) [Escherichia coli strain PK12]
MATMKDVARQAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=490251 KFU67_RS24035 WP_000224500.1 4946601..4947593(-) (cytR) [Escherichia coli strain PK12]
TTGGCTACAATGAAAGATGTTGCCCGCCAGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATCGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAACGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361