Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ILP78_RS06775 Genome accession   NZ_CP062465
Coordinates   1341107..1341793 (+) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 6     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1336107..1346793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP78_RS06740 (ILP78_06740) yqeH 1336634..1337734 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  ILP78_RS06745 (ILP78_06745) aroE 1337748..1338554 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  ILP78_RS06750 (ILP78_06750) yhbY 1338558..1338848 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ILP78_RS06755 (ILP78_06755) nadD 1338851..1339420 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ILP78_RS06760 (ILP78_06760) yqeK 1339410..1339994 (+) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ILP78_RS06765 (ILP78_06765) rsfS 1339995..1340348 (+) 354 WP_001088020.1 ribosome silencing factor -
  ILP78_RS06770 (ILP78_06770) - 1340351..1341067 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ILP78_RS06775 (ILP78_06775) comEA 1341107..1341793 (+) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  ILP78_RS06780 (ILP78_06780) - 1341885..1342346 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ILP78_RS06785 (ILP78_06785) comEC 1342351..1344552 (+) 2202 WP_025175028.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ILP78_RS06790 (ILP78_06790) holA 1344609..1345583 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ILP78_RS06795 (ILP78_06795) rpsT 1345628..1345879 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=490199 ILP78_RS06775 WP_072353822.1 1341107..1341793(+) (comEA) [Staphylococcus aureus strain MRSA - AMRF 6]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=490199 ILP78_RS06775 WP_072353822.1 1341107..1341793(+) (comEA) [Staphylococcus aureus strain MRSA - AMRF 6]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978