Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KFU67_RS04400 Genome accession   NZ_CP074031
Coordinates   905912..906388 (-) Length   158 a.a.
NCBI ID   WP_061092719.1    Uniprot ID   -
Organism   Escherichia coli strain PK12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 900912..911388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU67_RS04360 (KFU67_04305) - 901446..901628 (-) 183 Protein_858 IS110 family transposase -
  KFU67_RS04370 (KFU67_04315) - 903273..903842 (-) 570 WP_001290252.1 DUF4942 domain-containing protein -
  KFU67_RS04375 (KFU67_04320) - 903939..904136 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  KFU67_RS04380 (KFU67_04325) - 904148..904636 (-) 489 WP_000777545.1 DUF5983 family protein -
  KFU67_RS04385 (KFU67_04330) - 904633..905007 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  KFU67_RS04390 (KFU67_04335) - 905097..905465 (-) 369 WP_001540478.1 type IV toxin-antitoxin system YeeU family antitoxin -
  KFU67_RS04395 (KFU67_04340) - 905628..905849 (-) 222 WP_000692311.1 DUF987 domain-containing protein -
  KFU67_RS04400 (KFU67_04345) radC 905912..906388 (-) 477 WP_061092719.1 RadC family protein Machinery gene
  KFU67_RS04405 (KFU67_04350) - 906404..906889 (-) 486 WP_023909076.1 antirestriction protein -
  KFU67_RS04410 (KFU67_04355) - 906981..907799 (-) 819 WP_001234382.1 DUF932 domain-containing protein -
  KFU67_RS04415 (KFU67_04360) - 907889..908122 (-) 234 WP_001278283.1 DUF905 family protein -
  KFU67_RS04420 (KFU67_04365) - 908128..908805 (-) 678 WP_001097301.1 hypothetical protein -
  KFU67_RS04425 (KFU67_04370) - 908953..909633 (-) 681 WP_001282919.1 YafY family protein -
  KFU67_RS04430 (KFU67_04375) - 909836..910720 (-) 885 WP_001116801.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17806.47 Da        Isoelectric Point: 7.6152

>NTDB_id=490189 KFU67_RS04400 WP_061092719.1 905912..906388(-) (radC) [Escherichia coli strain PK12]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLTHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=490189 KFU67_RS04400 WP_061092719.1 905912..906388(-) (radC) [Escherichia coli strain PK12]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGACACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38