Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IF693_RS02365 Genome accession   NZ_CP062421
Coordinates   441342..441788 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_003     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436342..446788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF693_RS02330 (IF693_02330) - 436836..437039 (+) 204 WP_000087561.1 YqgQ family protein -
  IF693_RS02335 (IF693_02335) - 437036..438022 (+) 987 WP_000161314.1 ROK family glucokinase -
  IF693_RS02340 (IF693_02340) - 438022..438351 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF693_RS02345 (IF693_02345) - 438348..438971 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF693_RS02350 (IF693_02350) comGA 439023..439997 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IF693_RS02355 (IF693_02355) comGB 439969..441039 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF693_RS02360 (IF693_02360) comGC 441053..441364 (+) 312 WP_240024816.1 competence type IV pilus major pilin ComGC Machinery gene
  IF693_RS02365 (IF693_02365) comGD 441342..441788 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF693_RS02370 (IF693_02370) comGE 441775..442074 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  IF693_RS02375 (IF693_02375) comGF 441992..442489 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF693_RS02380 (IF693_02380) - 442586..442732 (+) 147 WP_001789879.1 hypothetical protein -
  IF693_RS02385 (IF693_02385) - 442722..443246 (+) 525 WP_001015119.1 shikimate kinase -
  IF693_RS02390 (IF693_02390) gcvT 443405..444496 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  IF693_RS02395 (IF693_02395) gcvPA 444516..445862 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=490114 IF693_RS02365 WP_001788899.1 441342..441788(+) (comGD) [Staphylococcus aureus strain NAS_AN_003]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=490114 IF693_RS02365 WP_001788899.1 441342..441788(+) (comGD) [Staphylococcus aureus strain NAS_AN_003]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1