Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   STH8232_RS07995 Genome accession   NC_017581
Coordinates   1546872..1547603 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus JIM 8232     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541872..1552603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH8232_RS07970 (STH8232_1848) - 1542921..1544102 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  STH8232_RS07980 (STH8232_1850) trmB 1544338..1544979 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STH8232_RS07985 (STH8232_1851) ccrZ 1544989..1545780 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  STH8232_RS07990 (STH8232_1852) pptB 1545838..1546872 (-) 1035 WP_372430784.1 ABC transporter permease Regulator
  STH8232_RS07995 (STH8232_1853) pptA 1546872..1547603 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  STH8232_RS08000 (STH8232_1854) - 1547668..1548087 (+) 420 WP_014621894.1 HIT family protein -
  STH8232_RS08005 (STH8232_1855) - 1548084..1548383 (+) 300 WP_014621895.1 hypothetical protein -
  STH8232_RS08010 (STH8232_1856) - 1548435..1549163 (-) 729 WP_014621896.1 hypothetical protein -
  STH8232_RS08015 (STH8232_1857) - 1549182..1549817 (-) 636 WP_014621897.1 DUF4230 domain-containing protein -
  STH8232_RS12180 (STH8232_1858) - 1549836..1549961 (-) 126 WP_011681534.1 hypothetical protein -
  STH8232_RS08020 (STH8232_1859) - 1550383..1552482 (-) 2100 WP_011681535.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=49010 STH8232_RS07995 WP_002951673.1 1546872..1547603(-) (pptA) [Streptococcus thermophilus JIM 8232]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=49010 STH8232_RS07995 WP_002951673.1 1546872..1547603(-) (pptA) [Streptococcus thermophilus JIM 8232]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCAACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment