Detailed information NTG0489982

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU87_RS16790
• Genome accession: NZ_CP074019
• Coordinates: 3499775..3500767 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081589.1
• Uniprot ID: -
• Organism: Escherichia coli strain PM22
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3494775..3505767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU87_RS16765 (KFU87_16680)	ygbN	3495429..3496793 (+)	1365	WP_000104429.1	GntP family transporter	-
KFU87_RS16770 (KFU87_16685)	-	3496833..3497069 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
KFU87_RS16775 (KFU87_16690)	-	3497080..3498507 (-)	1428	WP_000863214.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
KFU87_RS16780 (KFU87_16695)	-	3498507..3499100 (-)	594	WP_000767733.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
KFU87_RS16785 (KFU87_16700)	-	3499247..3499654 (+)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
KFU87_RS16790 (KFU87_16705)	rpoS	3499775..3500767 (-)	993	WP_000081589.1	RNA polymerase sigma factor RpoS	Regulator
KFU87_RS16795 (KFU87_16710)	nlpD	3500830..3501924 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KFU87_RS16800 (KFU87_16715)	pcm	3502109..3502735 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU87_RS16805 (KFU87_16720)	surE	3502729..3503490 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU87_RS16810 (KFU87_16725)	truD	3503471..3504520 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU87_RS16815 (KFU87_16730)	ispF	3504517..3504996 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU87_RS16820 (KFU87_16735)	ispD	3504996..3505706 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38002.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=489982 KFU87_RS16790 WP_000081589.1 3499775..3500767(-) (rpoS) [Escherichia coli strain PM22]
MSQNTLKVHDLNEDAEFDENGVEVFDEKTLVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=489982 KFU87_RS16790 WP_000081589.1 3499775..3500767(-) (rpoS) [Escherichia coli strain PM22]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGACCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	71.903	100	0.721