Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU87_RS13260 Genome accession   NZ_CP074019
Coordinates   2760670..2762097 (+) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain PM22     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2755670..2767097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU87_RS13220 (KFU87_13140) yeeW 2755854..2756048 (+) 195 WP_000988599.1 DUF5983 family protein -
  KFU87_RS13225 (KFU87_13145) - 2756082..2756174 (+) 93 Protein_2594 DUF957 domain-containing protein -
  KFU87_RS13230 (KFU87_13150) - 2756463..2756600 (-) 138 Protein_2595 transposase domain-containing protein -
  KFU87_RS13235 (KFU87_13155) - 2756663..2756845 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KFU87_RS13240 (KFU87_13160) tmaR 2756946..2757275 (-) 330 WP_000450409.1 DUF496 family protein -
  KFU87_RS13245 (KFU87_13165) yeeA 2757447..2758505 (-) 1059 WP_001200905.1 FUSC family protein -
  KFU87_RS13250 (KFU87_13170) sbmC 2758703..2759176 (-) 474 WP_103656117.1 DNA gyrase inhibitor SbmC -
  KFU87_RS13255 (KFU87_13175) dacD 2759295..2760461 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU87_RS13260 (KFU87_13180) sbcB 2760670..2762097 (+) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  KFU87_RS13265 (KFU87_13185) tsuB 2762140..2762367 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU87_RS13270 (KFU87_13190) tsuA 2762381..2763439 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU87_RS13275 (KFU87_13195) plaP 2763618..2764976 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU87_RS13280 (KFU87_13200) yoeI 2764966..2765028 (-) 63 WP_010723108.1 membrane protein YoeI -
  KFU87_RS13285 (KFU87_13205) yeeY 2765243..2766172 (-) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  KFU87_RS13290 (KFU87_13210) yeeZ 2766218..2767042 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=489970 KFU87_RS13260 WP_000980570.1 2760670..2762097(+) (sbcB) [Escherichia coli strain PM22]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=489970 KFU87_RS13260 WP_000980570.1 2760670..2762097(+) (sbcB) [Escherichia coli strain PM22]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581