Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   STH8232_RS03960 Genome accession   NC_017581
Coordinates   752425..752718 (+) Length   97 a.a.
NCBI ID   WP_014621407.1    Uniprot ID   A0AAU9H9S0
Organism   Streptococcus thermophilus JIM 8232     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747425..757718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH8232_RS03940 (STH8232_0898) - 748635..749390 (+) 756 WP_014621403.1 hypothetical protein -
  STH8232_RS11780 (STH8232_0899) - 749371..750537 (+) 1167 WP_014621404.1 restriction endonuclease subunit S -
  STH8232_RS03950 (STH8232_0900) - 750554..751750 (+) 1197 WP_014621405.1 haloacid dehalogenase-like hydrolase -
  STH8232_RS03955 (STH8232_0901) - 752069..752435 (+) 367 Protein_715 type II toxin-antitoxin system RelE/ParE family toxin -
  STH8232_RS03960 (STH8232_0902) HI0659 752425..752718 (+) 294 WP_014621407.1 helix-turn-helix domain-containing protein Machinery gene
  STH8232_RS03965 (STH8232_0903) - 752740..754341 (+) 1602 WP_014621408.1 type I restriction-modification system subunit M -
  STH8232_RS11075 - 754449..754838 (+) 390 Protein_718 PD-(D/E)XK nuclease family transposase -
  STH8232_RS12130 (STH8232_0905) - 754936..755886 (+) 951 WP_014621410.1 DNA/RNA non-specific endonuclease -
  STH8232_RS03980 (STH8232_0907) - 756086..756646 (+) 561 WP_014621411.1 LemA family protein -
  STH8232_RS03985 (STH8232_0908) htpX 756648..757547 (+) 900 WP_014621412.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10744.50 Da        Isoelectric Point: 5.8962

>NTDB_id=48991 STH8232_RS03960 WP_014621407.1 752425..752718(+) (HI0659) [Streptococcus thermophilus JIM 8232]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKI

Nucleotide


Download         Length: 294 bp        

>NTDB_id=48991 STH8232_RS03960 WP_014621407.1 752425..752718(+) (HI0659) [Streptococcus thermophilus JIM 8232]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTTTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAGATCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment