Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU81_RS09130 Genome accession   NZ_CP074012
Coordinates   1884477..1885904 (-) Length   475 a.a.
NCBI ID   WP_000980611.1    Uniprot ID   -
Organism   Escherichia coli strain PI24     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879477..1890904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU81_RS09100 (KFU81_09055) yeeZ 1879532..1880356 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  KFU81_RS09105 (KFU81_09060) yeeY 1880402..1881331 (+) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  KFU81_RS09110 (KFU81_09065) yoeI 1881546..1881608 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU81_RS09115 (KFU81_09070) plaP 1881598..1882956 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU81_RS09120 (KFU81_09075) tsuA 1883135..1884193 (+) 1059 WP_257170982.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU81_RS09125 (KFU81_09080) tsuB 1884207..1884434 (+) 228 WP_000985270.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU81_RS09130 (KFU81_09085) sbcB 1884477..1885904 (-) 1428 WP_000980611.1 exodeoxyribonuclease I Machinery gene
  KFU81_RS09135 (KFU81_09090) dacD 1886113..1887279 (+) 1167 WP_000830170.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU81_RS09140 (KFU81_09095) sbmC 1887398..1887871 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  KFU81_RS09145 (KFU81_09100) yeeA 1888069..1889127 (+) 1059 WP_001200891.1 FUSC family protein -
  KFU81_RS09150 (KFU81_09105) tmaR 1889299..1889628 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU81_RS09155 (KFU81_09110) - 1889729..1890172 (-) 444 WP_206287908.1 EutP/PduV family microcompartment system protein -
  KFU81_RS09160 (KFU81_09115) pduU 1890177..1890527 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=489885 KFU81_RS09130 WP_000980611.1 1884477..1885904(-) (sbcB) [Escherichia coli strain PI24]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=489885 KFU81_RS09130 WP_000980611.1 1884477..1885904(-) (sbcB) [Escherichia coli strain PI24]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585