Detailed information NTG0489871

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU81_RS05310
• Genome accession: NZ_CP074012
• Coordinates: 1098204..1099196 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PI24
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1093204..1104196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU81_RS05280 (KFU81_05240)	ispD	1093265..1093975 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU81_RS05285 (KFU81_05245)	ispF	1093975..1094454 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU81_RS05290 (KFU81_05250)	truD	1094451..1095500 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU81_RS05295 (KFU81_05255)	surE	1095481..1096242 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU81_RS05300 (KFU81_05260)	pcm	1096236..1096862 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU81_RS05305 (KFU81_05265)	nlpD	1097047..1098141 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KFU81_RS05310 (KFU81_05270)	rpoS	1098204..1099196 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU81_RS05315 (KFU81_05275)	ygbN	1099290..1100654 (-)	1365	WP_000104429.1	GntP family transporter	-
KFU81_RS05320 (KFU81_05280)	ygbM	1100743..1101519 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
KFU81_RS05325 (KFU81_05285)	ygbL	1101524..1102162 (-)	639	WP_001278994.1	aldolase	-
KFU81_RS05330 (KFU81_05290)	otnK	1102159..1103421 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=489871 KFU81_RS05310 WP_000081550.1 1098204..1099196(+) (rpoS) [Escherichia coli strain PI24]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=489871 KFU81_RS05310 WP_000081550.1 1098204..1099196(+) (rpoS) [Escherichia coli strain PI24]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715