Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STH8232_RS02380 Genome accession   NC_017581
Coordinates   432917..433360 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus JIM 8232     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 427917..438360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH8232_RS02360 (STH8232_0530) - 428440..429192 (-) 753 WP_011680801.1 NUDIX domain-containing protein -
  STH8232_RS02365 (STH8232_0531) - 429256..430361 (-) 1106 Protein_402 AAA family ATPase -
  STH8232_RS02370 (STH8232_0534) gdhA 430705..432057 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STH8232_RS02375 (STH8232_0535) - 432316..432726 (+) 411 WP_011680804.1 peptide deformylase -
  STH8232_RS02380 (STH8232_0536) rcrR 432917..433360 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STH8232_RS02385 (STH8232_0537) rcrP 433364..435178 (+) 1815 WP_014621206.1 ABC transporter ATP-binding protein Regulator
  STH8232_RS02390 (STH8232_0538) rcrQ 435168..436946 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  STH8232_RS02395 (STH8232_0539) - 437102..437359 (+) 258 WP_231838387.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=48982 STH8232_RS02380 WP_002945408.1 432917..433360(+) (rcrR) [Streptococcus thermophilus JIM 8232]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=48982 STH8232_RS02380 WP_002945408.1 432917..433360(+) (rcrR) [Streptococcus thermophilus JIM 8232]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment